Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:39:19 -0400 (Thu, 12 Apr 2018).
Package 605/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GOsummaries 2.12.0 Raivo Kolde
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | ERROR | skipped | skipped | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: GOsummaries |
Version: 2.12.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GOsummaries_2.12.0.tar.gz |
StartedAt: 2018-04-12 04:41:36 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 04:42:34 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 57.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GOsummaries.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GOsummaries_2.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/GOsummaries.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GOsummaries/DESCRIPTION’ ... OK * this is package ‘GOsummaries’ version ‘2.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GOsummaries’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE adjust_wordcloud_appearance: no visible global function definition for ‘colorRampPalette’ annotate.gosummaries: no visible global function definition for ‘packageVersion’ gen_wordcloud_legend: no visible global function definition for ‘colorRampPalette’ open_file_con : <anonymous>: no visible global function definition for ‘pdf’ open_file_con : <anonymous>: no visible global function definition for ‘png’ open_file_con : <anonymous>: no visible global function definition for ‘jpeg’ open_file_con : <anonymous>: no visible global function definition for ‘tiff’ open_file_con : <anonymous>: no visible global function definition for ‘bmp’ panel_boxplot : qq: no visible global function definition for ‘boxplot.stats’ panel_boxplot: no visible binding for global variable ‘x’ panel_boxplot: no visible binding for global variable ‘y’ panel_boxplot: no visible binding for global variable ‘Class’ panel_dummy: no visible binding for global variable ‘y’ panel_dummy: no visible binding for global variable ‘x’ plotWordcloud: no visible global function definition for ‘colorRampPalette’ plotWordcloud: no visible global function definition for ‘runif’ plot_motor: no visible global function definition for ‘dev.off’ print.gosummaries: no visible global function definition for ‘head’ pspearman: no visible global function definition for ‘pt’ spearman_mds: no visible global function definition for ‘cor’ Undefined global functions or variables: Class bmp boxplot.stats colorRampPalette cor dev.off head jpeg packageVersion pdf png pt runif tiff x y Consider adding importFrom("grDevices", "bmp", "boxplot.stats", "colorRampPalette", "dev.off", "jpeg", "pdf", "png", "tiff") importFrom("stats", "cor", "pt", "runif") importFrom("utils", "head", "packageVersion") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... NOTE '::' or ':::' import not declared from: ‘BiocStyle’ * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/GOsummaries.Rcheck/00check.log’ for details.
GOsummaries.Rcheck/00install.out
* installing *source* package ‘GOsummaries’ ... ** libs clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c findCoordinates.cpp -o findCoordinates.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOsummaries.so findCoordinates.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/GOsummaries.Rcheck/GOsummaries/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GOsummaries)
GOsummaries.Rcheck/GOsummaries-Ex.timings
name | user | system | elapsed | |
add_expression.gosummaries | 0.001 | 0.000 | 0.001 | |
add_to_slot.gosummaries | 0.307 | 0.008 | 0.320 | |
customize | 0.001 | 0.000 | 0.001 | |
gosummaries.MArrayLM | 0.001 | 0.000 | 0.002 | |
gosummaries | 1.500 | 0.018 | 1.554 | |
gosummaries.kmeans | 0.000 | 0.000 | 0.001 | |
gosummaries.matrix | 0.001 | 0.000 | 0.001 | |
gosummaries.prcomp | 2.986 | 0.021 | 3.081 | |
panel_boxplot | 0.001 | 0.001 | 0.002 | |
plot.gosummaries | 0.002 | 0.000 | 0.002 | |
plotWordcloud | 0.083 | 0.001 | 0.084 | |