Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:38:47 -0400 (Thu, 12 Apr 2018).
Package 623/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GSAR 1.12.0 Yasir Rahmatallah
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: GSAR |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSAR_1.12.0.tar.gz |
StartedAt: 2018-04-12 04:50:52 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 04:51:44 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 52.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSAR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSAR_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/GSAR.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GSAR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GSAR’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSAR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed WWtest 6.014 0.013 6.177 AggrFtest 5.205 0.025 5.329 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
GSAR.Rcheck/00install.out
* installing *source* package ‘GSAR’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GSAR)
GSAR.Rcheck/GSAR-Ex.timings
name | user | system | elapsed | |
AggrFtest | 5.205 | 0.025 | 5.329 | |
GSNCAtest | 2.915 | 0.015 | 2.995 | |
HDP.ranking | 0.219 | 0.001 | 0.225 | |
KStest | 0.811 | 0.012 | 0.835 | |
MDtest | 1.025 | 0.024 | 1.065 | |
RKStest | 0.538 | 0.004 | 0.551 | |
RMDtest | 0.895 | 0.020 | 0.935 | |
TestGeneSets | 1.208 | 0.027 | 1.270 | |
WWtest | 6.014 | 0.013 | 6.177 | |
findMST2.PPI | 0.006 | 0.000 | 0.007 | |
findMST2 | 0.020 | 0.001 | 0.021 | |
p53DataSet | 0.073 | 0.010 | 0.086 | |
plotMST2.pathway | 0.839 | 0.003 | 0.858 | |
radial.ranking | 0.009 | 0.000 | 0.010 | |