Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:10:09 -0400 (Thu, 12 Apr 2018).
Package 633/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Gviz 1.22.3 Robert Ivanek
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: Gviz |
Version: 1.22.3 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings Gviz_1.22.3.tar.gz |
StartedAt: 2018-04-12 00:11:33 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 00:16:43 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 309.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Gviz.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings Gviz_1.22.3.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/Gviz.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Gviz/DESCRIPTION’ ... OK * this is package ‘Gviz’ version ‘1.22.3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Gviz’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: doc 1.7Mb extdata 2.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed AlignmentsTrack-class 10.156 0.628 10.920 GeneRegionTrack-class 5.476 0.016 5.499 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.6-bioc/meat/Gviz.Rcheck/00check.log’ for details.
Gviz.Rcheck/00install.out
* installing *source* package ‘Gviz’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Gviz)
Gviz.Rcheck/Gviz-Ex.timings
name | user | system | elapsed | |
AlignedReadTrack-class | 3.724 | 0.036 | 3.762 | |
AlignmentsTrack-class | 10.156 | 0.628 | 10.920 | |
AnnotationTrack-class | 4.236 | 0.008 | 4.262 | |
BiomartGeneRegionTrack-class | 2.752 | 0.004 | 2.755 | |
DataTrack-class | 0.620 | 0.000 | 0.622 | |
DisplayPars-class | 0.024 | 0.000 | 0.025 | |
GeneRegionTrack-class | 5.476 | 0.016 | 5.499 | |
GenomeAxisTrack-class | 3.080 | 0.032 | 3.120 | |
IdeogramTrack-class | 0.340 | 0.000 | 0.341 | |
SequenceTrack-class | 2.472 | 0.444 | 3.301 | |
plotTracks | 3.100 | 0.004 | 3.105 | |