Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:28:51 -0400 (Thu, 12 Apr 2018).
Package 733/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
KEGGlincs 1.4.0 Shana White
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: KEGGlincs |
Version: 1.4.0 |
Command: rm -rf KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && mkdir KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGlincs.buildbin-libdir KEGGlincs_1.4.0.tar.gz >KEGGlincs.Rcheck\00install.out 2>&1 && cp KEGGlincs.Rcheck\00install.out KEGGlincs-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=KEGGlincs.buildbin-libdir --install="check:KEGGlincs-install.out" --force-multiarch --no-vignettes --timings KEGGlincs_1.4.0.tar.gz |
StartedAt: 2018-04-12 00:58:55 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:04:48 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 353.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: KEGGlincs.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && mkdir KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGlincs.buildbin-libdir KEGGlincs_1.4.0.tar.gz >KEGGlincs.Rcheck\00install.out 2>&1 && cp KEGGlincs.Rcheck\00install.out KEGGlincs-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=KEGGlincs.buildbin-libdir --install="check:KEGGlincs-install.out" --force-multiarch --no-vignettes --timings KEGGlincs_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/KEGGlincs.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'KEGGlincs/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'KEGGlincs' version '1.4.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'KEGGlincs' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed add_edge_data 15.04 1.78 20.44 overlap_info 15.47 0.62 16.31 add_KEGG_drugs 10.42 0.31 15.96 edge_mapping_info 8.67 0.46 9.36 path_genes_by_cell_type 8.15 0.42 8.83 refine_mappings 6.59 0.16 7.15 get_graph_object 6.59 0.08 6.89 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed add_edge_data 21.79 0.56 22.61 overlap_info 16.22 0.79 17.23 add_KEGG_drugs 13.21 0.28 18.00 path_genes_by_cell_type 10.19 0.21 10.65 refine_mappings 8.56 0.30 9.10 edge_mapping_info 8.14 0.41 8.79 get_graph_object 6.66 0.10 6.98 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
KEGGlincs.Rcheck/00install.out
install for i386 * installing *source* package 'KEGGlincs' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'KEGGlincs' finding HTML links ... done KEGG_lincs html KEGGlincs html KL_compare html add_KEGG_drugs html add_edge_data html cyto_vis html edge_mapping_info html expand_KEGG_edges html expand_KEGG_mappings html generate_mappings html get_KGML html get_drug_table html get_fisher_info html get_graph_object html keggerize_edges html node_mapping_info html overlap_info html path_genes_by_cell_type html refine_mappings html tidy_edge html toCytoscape html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'KEGGlincs' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'KEGGlincs' as KEGGlincs_1.4.0.zip * DONE (KEGGlincs) In R CMD INSTALL In R CMD INSTALL
KEGGlincs.Rcheck/examples_i386/KEGGlincs-Ex.timings
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KEGGlincs.Rcheck/examples_x64/KEGGlincs-Ex.timings
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