Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:24:33 -0400 (Thu, 12 Apr 2018).
Package 809/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MEIGOR 1.12.0 Jose Egea
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: MEIGOR |
Version: 1.12.0 |
Command: rm -rf MEIGOR.buildbin-libdir MEIGOR.Rcheck && mkdir MEIGOR.buildbin-libdir MEIGOR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MEIGOR.buildbin-libdir MEIGOR_1.12.0.tar.gz >MEIGOR.Rcheck\00install.out 2>&1 && cp MEIGOR.Rcheck\00install.out MEIGOR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MEIGOR.buildbin-libdir --install="check:MEIGOR-install.out" --force-multiarch --no-vignettes --timings MEIGOR_1.12.0.tar.gz |
StartedAt: 2018-04-12 01:12:38 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:15:23 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 164.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MEIGOR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MEIGOR.buildbin-libdir MEIGOR.Rcheck && mkdir MEIGOR.buildbin-libdir MEIGOR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MEIGOR.buildbin-libdir MEIGOR_1.12.0.tar.gz >MEIGOR.Rcheck\00install.out 2>&1 && cp MEIGOR.Rcheck\00install.out MEIGOR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MEIGOR.buildbin-libdir --install="check:MEIGOR-install.out" --force-multiarch --no-vignettes --timings MEIGOR_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MEIGOR.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MEIGOR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MEIGOR' version '1.12.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MEIGOR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CeSSR: no visible global function definition for 'sd' CeSSR: no visible binding for global variable 'sd' between_chain_variances: no visible global function definition for 'var' essR: no visible global function definition for 'combn' essR: no visible global function definition for 'runif' essR_multistart: no visible global function definition for 'runif' essR_multistart: no visible global function definition for 'hist' estimate: no visible global function definition for 'runif' generate_new_position: no visible global function definition for 'rnorm' initialize: no visible global function definition for 'runif' initialize_and_pool: no visible binding for global variable 'mulichain' nls_fobj: no visible binding for global variable 'fobj_global' nls_fobj: no visible binding for '<<-' assignment to 'n_fun_eval' nls_fobj: no visible binding for global variable 'n_fun_eval' optim_fobj: no visible binding for global variable 'fobj_global' optim_fobj: no visible binding for '<<-' assignment to 'n_fun_eval' optim_fobj: no visible binding for global variable 'n_fun_eval' runBayesFit : prior: no visible binding for global variable 'prior_mean' runBayesFit : prior: no visible binding for global variable 'prior_var' rvnds_hamming: no visible global function definition for 'runif' solnp_eq: no visible binding for global variable 'fobj_global' solnp_eq: no visible binding for '<<-' assignment to 'n_fun_eval' solnp_eq: no visible binding for global variable 'n_fun_eval' solnp_eq: no visible binding for global variable 'neq_global' solnp_fobj: no visible binding for global variable 'fobj_global' solnp_fobj: no visible binding for '<<-' assignment to 'n_fun_eval' solnp_fobj: no visible binding for global variable 'n_fun_eval' solnp_ineq: no visible binding for global variable 'fobj_global' solnp_ineq: no visible binding for '<<-' assignment to 'n_fun_eval' solnp_ineq: no visible binding for global variable 'n_fun_eval' solnp_ineq: no visible binding for global variable 'neq_global' solnp_ineq: no visible binding for global variable 'nconst_global' ssm_beyond: no visible global function definition for 'runif' ssm_defaults: no visible binding for global variable 'plot' ssm_localsolver: no visible binding for '<<-' assignment to 'n_fun_eval' ssm_localsolver: no visible binding for '<<-' assignment to 'fobj_global' ssm_localsolver: no visible binding for '<<-' assignment to 'neq_global' ssm_localsolver: no visible binding for '<<-' assignment to 'nconst_global' ssm_localsolver: no visible binding for '<<-' assignment to 'extra_args' ssm_localsolver: no visible global function definition for 'optim' ssm_localsolver: no visible binding for global variable 'n_fun_eval' ssm_localsolver: no visible global function definition for 'nls' ssm_localsolver: no visible binding for global variable 'extra_args' ssm_localsolver: no visible global function definition for 'coef' within_chain_variances: no visible global function definition for 'var' Undefined global functions or variables: coef combn extra_args fobj_global hist mulichain n_fun_eval nconst_global neq_global nls optim plot prior_mean prior_var rnorm runif sd var Consider adding importFrom("graphics", "hist", "plot") importFrom("stats", "coef", "nls", "optim", "rnorm", "runif", "sd", "var") importFrom("utils", "combn") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed essR 11.36 0.06 11.42 cur_params 8.31 0.02 8.40 runBayesFit 7.38 0.01 7.39 CeVNSR 0.64 0.06 10.56 CeSSR 0.28 0.00 5.69 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed essR 11.04 0.03 11.08 runBayesFit 8.47 0.02 8.48 cur_params 8.35 0.00 8.48 CeVNSR 0.91 0.00 10.43 CeSSR 0.47 0.05 6.75 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MEIGOR.Rcheck/00check.log' for details.
MEIGOR.Rcheck/00install.out
install for i386 * installing *source* package 'MEIGOR' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'MEIGOR' finding HTML links ... done BayesFit html CeSSR html CeVNSR html MEIGO html MEIGOR-package html cnolist html cur_params html dhc html essR-MEIGOR html essR html essR_multistart html eucl_dist html ith_VNSR html ith_essR html model html nls_fobj html optim_fobj html paramsOpt html runBayesFit html rvnds_hamming html rvnds_local html solnp_eq html solnp_fobj html solnp_ineq html ssm_beyond html ssm_defaults html ssm_evalfc html ssm_isdif2 html ssm_localsolver html ssm_optset html ssm_penalty_function html ssm_round_int html vns_defaults html vns_optset html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'MEIGOR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MEIGOR' as MEIGOR_1.12.0.zip * DONE (MEIGOR) In R CMD INSTALL In R CMD INSTALL
MEIGOR.Rcheck/examples_i386/MEIGOR-Ex.timings
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MEIGOR.Rcheck/examples_x64/MEIGOR-Ex.timings
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