Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:25:52 -0400 (Thu, 12 Apr 2018).
Package 792/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MatrixRider 1.10.0 Elena Grassi
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: MatrixRider |
Version: 1.10.0 |
Command: rm -rf MatrixRider.buildbin-libdir MatrixRider.Rcheck && mkdir MatrixRider.buildbin-libdir MatrixRider.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MatrixRider.buildbin-libdir MatrixRider_1.10.0.tar.gz >MatrixRider.Rcheck\00install.out 2>&1 && cp MatrixRider.Rcheck\00install.out MatrixRider-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MatrixRider.buildbin-libdir --install="check:MatrixRider-install.out" --force-multiarch --no-vignettes --timings MatrixRider_1.10.0.tar.gz |
StartedAt: 2018-04-12 01:09:27 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:15:17 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 350.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MatrixRider.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MatrixRider.buildbin-libdir MatrixRider.Rcheck && mkdir MatrixRider.buildbin-libdir MatrixRider.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MatrixRider.buildbin-libdir MatrixRider_1.10.0.tar.gz >MatrixRider.Rcheck\00install.out 2>&1 && cp MatrixRider.Rcheck\00install.out MatrixRider-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MatrixRider.buildbin-libdir --install="check:MatrixRider-install.out" --force-multiarch --no-vignettes --timings MatrixRider_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MatrixRider.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MatrixRider/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MatrixRider' version '1.10.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MatrixRider' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MatrixRider.buildbin-libdir/MatrixRider/libs/i386/MatrixRider.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MatrixRider.Rcheck/00check.log' for details.
MatrixRider.Rcheck/00install.out
install for i386 * installing *source* package 'MatrixRider' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c Biostring_stubs.c -o Biostring_stubs.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c CuTest.c -o CuTest.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_init_MatrixRider.c -o R_init_MatrixRider.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c RunCuTest.c -o RunCuTest.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c XVector_stubs.c -o XVector_stubs.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c matrix_rider.c -o matrix_rider.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o MatrixRider.dll tmp.def Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/MatrixRider.buildbin-libdir/MatrixRider/libs/i386 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'MatrixRider' finding HTML links ... done MatrixRider-package html getSeqOccupancy-method html finding level-2 HTML links ... done ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'MatrixRider' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c Biostring_stubs.c -o Biostring_stubs.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c CuTest.c -o CuTest.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_init_MatrixRider.c -o R_init_MatrixRider.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c RunCuTest.c -o RunCuTest.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c XVector_stubs.c -o XVector_stubs.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/IRanges/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/XVector/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Biostrings/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/S4Vectors/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix_rider.c -o matrix_rider.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o MatrixRider.dll tmp.def Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/MatrixRider.buildbin-libdir/MatrixRider/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'MatrixRider' as MatrixRider_1.10.0.zip * DONE (MatrixRider) In R CMD INSTALL In R CMD INSTALL
MatrixRider.Rcheck/tests_i386/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("MatrixRider") Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: IRanges Loading required package: XVector Attaching package: 'Biostrings' The following object is masked from 'package:base': strsplit RUNIT TEST PROTOCOL -- Thu Apr 12 01:14:54 2018 *********************************************** Number of test functions: 6 Number of errors: 0 Number of failures: 0 1 Test Suite : MatrixRider RUnit Tests - 6 test functions, 0 errors, 0 failures Number of test functions: 6 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 12.14 0.53 13.54 |
MatrixRider.Rcheck/tests_x64/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("MatrixRider") Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: IRanges Loading required package: XVector Attaching package: 'Biostrings' The following object is masked from 'package:base': strsplit RUNIT TEST PROTOCOL -- Thu Apr 12 01:15:11 2018 *********************************************** Number of test functions: 6 Number of errors: 0 Number of failures: 0 1 Test Suite : MatrixRider RUnit Tests - 6 test functions, 0 errors, 0 failures Number of test functions: 6 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 15.85 0.46 16.32 |
MatrixRider.Rcheck/examples_i386/MatrixRider-Ex.timings
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MatrixRider.Rcheck/examples_x64/MatrixRider-Ex.timings
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