Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:12:15 -0400 (Thu, 12 Apr 2018).
Package 885/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MoPS 1.12.0 Philipp Eser
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: MoPS |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MoPS_1.12.0.tar.gz |
StartedAt: 2018-04-12 01:14:24 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:15:02 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 37.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MoPS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MoPS_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/MoPS.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MoPS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MoPS’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MoPS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fit.periodic: no visible global function definition for ‘lm’ fit.periodic: no visible global function definition for ‘cor’ fun.lognormal: no visible global function definition for ‘dlnorm’ fun.lognormal.psi: no visible global function definition for ‘dlnorm’ makewave: no visible global function definition for ‘integrate’ pathfunction: no visible global function definition for ‘approxfun’ Undefined global functions or variables: approxfun cor dlnorm integrate lm Consider adding importFrom("stats", "approxfun", "cor", "dlnorm", "integrate", "lm") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed predictTimecourses 6.532 0.000 6.538 fit.periodic 6.236 0.012 6.253 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.6-bioc/meat/MoPS.Rcheck/00check.log’ for details.
MoPS.Rcheck/00install.out
* installing *source* package ‘MoPS’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MoPS)
MoPS.Rcheck/MoPS-Ex.timings
name | user | system | elapsed | |
fit.periodic | 6.236 | 0.012 | 6.253 | |
predictTimecourses | 6.532 | 0.000 | 6.538 | |
result.as.dataframe | 1.416 | 0.000 | 1.417 | |