Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:40:47 -0400 (Thu, 12 Apr 2018).
Package 928/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
NanoStringQCPro 1.10.0 Robert Ziman
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: NanoStringQCPro |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings NanoStringQCPro_1.10.0.tar.gz |
StartedAt: 2018-04-12 07:00:08 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 07:02:40 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 152.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NanoStringQCPro.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings NanoStringQCPro_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/NanoStringQCPro.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘NanoStringQCPro/DESCRIPTION’ ... OK * this is package ‘NanoStringQCPro’ version ‘1.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NanoStringQCPro’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘knitr’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE centeredSampleClustering: no visible global function definition for ‘png’ centeredSampleClustering: no visible global function definition for ‘dev.off’ countsInBlankSamples_verticalPlot: no visible global function definition for ‘png’ countsInBlankSamples_verticalPlot: no visible global function definition for ‘dev.off’ geneClustering: no visible global function definition for ‘png’ geneClustering: no visible global function definition for ‘dev.off’ negCtrlsByLane_verticalPlot: no visible global function definition for ‘png’ negCtrlsByLane_verticalPlot: no visible global function definition for ‘dev.off’ previewPNG: no visible global function definition for ‘png’ previewPNG: no visible global function definition for ‘dev.off’ sampleClustering,RccSet: no visible global function definition for ‘png’ sampleClustering,RccSet: no visible global function definition for ‘dev.off’ Undefined global functions or variables: dev.off png Consider adding importFrom("grDevices", "dev.off", "png") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed makeQCReport 15.259 1.061 16.27 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/NanoStringQCPro.Rcheck/00check.log’ for details.
NanoStringQCPro.Rcheck/00install.out
* installing *source* package ‘NanoStringQCPro’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (NanoStringQCPro)
NanoStringQCPro.Rcheck/NanoStringQCPro-Ex.timings
name | user | system | elapsed | |
RccSet-class | 0.860 | 0.018 | 0.892 | |
addCodesetAnnotation | 0.359 | 0.003 | 0.368 | |
buildCodesetAnnotation | 0.111 | 0.000 | 0.113 | |
checkRccSet | 0.050 | 0.000 | 0.051 | |
contentNorm | 0.152 | 0.001 | 0.154 | |
copyRccSet | 0.016 | 0.001 | 0.017 | |
getBackground | 0.080 | 0.001 | 0.085 | |
getBlankLabel | 0.003 | 0.000 | 0.003 | |
makeQCReport | 15.259 | 1.061 | 16.270 | |
newRccSet | 0.487 | 0.003 | 0.499 | |
posCtrlNorm | 0.020 | 0.001 | 0.022 | |
preprocRccSet | 0.140 | 0.001 | 0.148 | |
presAbsCall | 0.051 | 0.001 | 0.053 | |
readCdrDesignData | 0.025 | 0.001 | 0.026 | |
readRcc | 0.004 | 0.000 | 0.004 | |
readRlf | 0.003 | 0.000 | 0.004 | |
subtractBackground | 0.074 | 0.001 | 0.076 | |