Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:17:36 -0400 (Thu, 12 Apr 2018).
Package 962/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
OLIN 1.56.0 Matthias Futschik
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: OLIN |
Version: 1.56.0 |
Command: rm -rf OLIN.buildbin-libdir OLIN.Rcheck && mkdir OLIN.buildbin-libdir OLIN.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OLIN.buildbin-libdir OLIN_1.56.0.tar.gz >OLIN.Rcheck\00install.out 2>&1 && cp OLIN.Rcheck\00install.out OLIN-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=OLIN.buildbin-libdir --install="check:OLIN-install.out" --force-multiarch --no-vignettes --timings OLIN_1.56.0.tar.gz |
StartedAt: 2018-04-12 01:53:16 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:55:03 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 107.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OLIN.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf OLIN.buildbin-libdir OLIN.Rcheck && mkdir OLIN.buildbin-libdir OLIN.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OLIN.buildbin-libdir OLIN_1.56.0.tar.gz >OLIN.Rcheck\00install.out 2>&1 && cp OLIN.Rcheck\00install.out OLIN-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=OLIN.buildbin-libdir --install="check:OLIN-install.out" --force-multiarch --no-vignettes --timings OLIN_1.56.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/OLIN.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'OLIN/DESCRIPTION' ... OK * this is package 'OLIN' version '1.56.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'OLIN' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'marray' 'methods' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'convert' in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. Package in Depends field not imported from: 'locfit' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ino: no visible global function definition for 'locfit' ino: no visible global function definition for 'predict' lin: no visible global function definition for 'locfit' lin: no visible global function definition for 'predict' oin: no visible global function definition for 'gcvplot' oin: no visible global function definition for 'locfit' oin: no visible global function definition for 'predict' olin: no visible global function definition for 'gcv' olin: no visible global function definition for 'locfit' olin: no visible global function definition for 'predict' Undefined global functions or variables: gcv gcvplot locfit predict Consider adding importFrom("stats", "predict") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed olin 25.55 0 25.54 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed olin 19.27 0.03 19.3 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/OLIN.Rcheck/00check.log' for details.
OLIN.Rcheck/00install.out
install for i386 * installing *source* package 'OLIN' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'OLIN' finding HTML links ... done anovaint html anovapin html anovaplate html anovaspatial html backgroundCorrect2 html bas html colorbar.mxy html colorbar.mxy.abs html colorbar.sig html fdr.int html fdr.int2 html fdr.spatial html fdr.spatial2 html fgbg.visu html ino html lin html m2v html ma.matrix html ma.vector html mxy.abs.plot html mxy.plot html mxy2.plot html oin html olin html p.int html p.int2 html p.spatial html p.spatial2 html sig.mask html sigint.plot html sigint.plot2 html sigxy.plot html sigxy.plot2 html sw html sw.olin html sw.xy html v2m html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'OLIN' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'OLIN' as OLIN_1.56.0.zip * DONE (OLIN) In R CMD INSTALL In R CMD INSTALL
OLIN.Rcheck/examples_i386/OLIN-Ex.timings
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OLIN.Rcheck/examples_x64/OLIN-Ex.timings
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