Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:20:53 -0400 (Thu, 12 Apr 2018).
Package 1152/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
REDseq 1.24.0 Lihua Julie Zhu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: REDseq |
Version: 1.24.0 |
Command: rm -rf REDseq.buildbin-libdir REDseq.Rcheck && mkdir REDseq.buildbin-libdir REDseq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=REDseq.buildbin-libdir REDseq_1.24.0.tar.gz >REDseq.Rcheck\00install.out 2>&1 && cp REDseq.Rcheck\00install.out REDseq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=REDseq.buildbin-libdir --install="check:REDseq-install.out" --force-multiarch --no-vignettes --timings REDseq_1.24.0.tar.gz |
StartedAt: 2018-04-12 02:34:17 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 02:40:49 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 391.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: REDseq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf REDseq.buildbin-libdir REDseq.Rcheck && mkdir REDseq.buildbin-libdir REDseq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=REDseq.buildbin-libdir REDseq_1.24.0.tar.gz >REDseq.Rcheck\00install.out 2>&1 && cp REDseq.Rcheck\00install.out REDseq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=REDseq.buildbin-libdir --install="check:REDseq-install.out" --force-multiarch --no-vignettes --timings REDseq_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/REDseq.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'REDseq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'REDseq' version '1.24.0' * checking package namespace information ... OK * checking package dependencies ... NOTE Depends: includes the non-default packages: 'BiocGenerics' 'BSgenome.Celegans.UCSC.ce2' 'multtest' 'Biostrings' 'BSgenome' 'ChIPpeakAnno' Adding so many packages to the search path is excessive and importing selectively is preferable. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'REDseq' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'BiocGenerics' 'Biostrings' 'ChIPpeakAnno' 'multtest' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'BSgenome.Celegans.UCSC.ce2' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed buildREmap 7.42 0.17 14.3 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed buildREmap 10.06 0.2 10.26 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/REDseq.Rcheck/00check.log' for details.
REDseq.Rcheck/00install.out
install for i386 * installing *source* package 'REDseq' ... ** R ** data ** inst ** preparing package for lazy loading No methods found in package 'IRanges' for requests: '%in%', 'rep.int' when loading 'REDseq' ** help *** installing help indices converting help for package 'REDseq' finding HTML links ... done REDseq-package html assignSeq2REsite html binom.test.REDseq html buildREmap html compareREDseq html distanceHistSeq2RE html example.REDseq html example.assignedREDseq html example.map html plotCutDistribution html searchPattern html summarizeByRE html summarizeBySeq html writeHits html ** building package indices ** installing vignettes ** testing if installed package can be loaded No methods found in package 'IRanges' for requests: '%in%', 'rep.int' when loading 'REDseq' In R CMD INSTALL install for x64 * installing *source* package 'REDseq' ... ** testing if installed package can be loaded No methods found in package 'IRanges' for requests: '%in%', 'rep.int' when loading 'REDseq' * MD5 sums packaged installation of 'REDseq' as REDseq_1.24.0.zip * DONE (REDseq) In R CMD INSTALL In R CMD INSTALL
REDseq.Rcheck/examples_i386/REDseq-Ex.timings
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REDseq.Rcheck/examples_x64/REDseq-Ex.timings
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