Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:17:08 -0400 (Thu, 12 Apr 2018).
Package 1201/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ROC 1.54.0 Vince Carey
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: ROC |
Version: 1.54.0 |
Command: rm -rf ROC.buildbin-libdir ROC.Rcheck && mkdir ROC.buildbin-libdir ROC.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ROC.buildbin-libdir ROC_1.54.0.tar.gz >ROC.Rcheck\00install.out 2>&1 && cp ROC.Rcheck\00install.out ROC-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ROC.buildbin-libdir --install="check:ROC-install.out" --force-multiarch --no-vignettes --timings ROC_1.54.0.tar.gz |
StartedAt: 2018-04-12 02:48:31 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 02:49:05 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 34.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ROC.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ROC.buildbin-libdir ROC.Rcheck && mkdir ROC.buildbin-libdir ROC.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ROC.buildbin-libdir ROC_1.54.0.tar.gz >ROC.Rcheck\00install.out 2>&1 && cp ROC.Rcheck\00install.out ROC-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ROC.buildbin-libdir --install="check:ROC-install.out" --force-multiarch --no-vignettes --timings ROC_1.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ROC.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ROC/DESCRIPTION' ... OK * this is package 'ROC' version '1.54.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ROC' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE AUCi: no visible global function definition for 'integrate' ROC: no visible global function definition for 'approx' pAUCi: no visible global function definition for 'integrate' trapezint: no visible global function definition for 'approx' plot,rocc: no visible global function definition for 'text' Undefined global functions or variables: approx integrate text Consider adding importFrom("graphics", "text") importFrom("stats", "approx", "integrate") to your NAMESPACE file. * checking Rd files ... NOTE prepare_Rd: AUC.Rd:38-39: Dropping empty section \value prepare_Rd: AUC.Rd:48: Dropping empty section \note prepare_Rd: rocdemo.sca.Rd:40: Dropping empty section \note prepare_Rd: rocdemo.sca.Rd:38: Dropping empty section \references prepare_Rd: trapezint.Rd:23: Dropping empty section \note prepare_Rd: trapezint.Rd:22: Dropping empty section \author prepare_Rd: trapezint.Rd:21: Dropping empty section \references prepare_Rd: trapezint.Rd:24: Dropping empty section \seealso * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ROC.buildbin-libdir/ROC/libs/i386/ROC.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ROC.Rcheck/00check.log' for details.
ROC.Rcheck/00install.out
install for i386 * installing *source* package 'ROC' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -mtune=generic -c ROC.cc -o ROC.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ROC.dll tmp.def ROC.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/ROC.buildbin-libdir/ROC/libs/i386 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'ROC' finding HTML links ... done AUC html plot-methods html rocc-class html rocdemo.sca html trapezint html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'ROC' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -mtune=generic -c ROC.cc -o ROC.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ROC.dll tmp.def ROC.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/ROC.buildbin-libdir/ROC/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'ROC' as ROC_1.54.0.zip * DONE (ROC) In R CMD INSTALL In R CMD INSTALL
ROC.Rcheck/examples_i386/ROC-Ex.timings
|
ROC.Rcheck/examples_x64/ROC-Ex.timings
|