Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:32:15 -0400 (Thu, 12 Apr 2018).
Package 1154/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RefPlus 1.48.0 Kai-Ming Chang
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: RefPlus |
Version: 1.48.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RefPlus_1.48.0.tar.gz |
StartedAt: 2018-04-12 08:30:24 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 08:32:06 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 102.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RefPlus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RefPlus_1.48.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/RefPlus.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RefPlus/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RefPlus’ version ‘1.48.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RefPlus’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘affyPLM’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE rma.para: no visible global function definition for ‘rmaPLM’ rma.para: no visible global function definition for ‘coefs.probe’ rma.para: no visible global function definition for ‘coefs’ Undefined global functions or variables: coefs coefs.probe rmaPLM * checking Rd files ... NOTE prepare_Rd: colMedians.Rd:19: Dropping empty section \references prepare_Rd: rmaref.predict.Rd:29-30: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed RefPlus-package 9.677 0.313 10.219 rmaplus 6.729 0.213 7.072 rma.para 5.099 0.141 5.333 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/RefPlus.Rcheck/00check.log’ for details.
RefPlus.Rcheck/00install.out
* installing *source* package ‘RefPlus’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (RefPlus)
RefPlus.Rcheck/RefPlus-Ex.timings
name | user | system | elapsed | |
RefPlus-package | 9.677 | 0.313 | 10.219 | |
colMedians | 0.001 | 0.000 | 0.002 | |
normalize.quantiles2 | 0.001 | 0.000 | 0.001 | |
rma.para | 5.099 | 0.141 | 5.333 | |
rmaplus | 6.729 | 0.213 | 7.072 | |