Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:22:06 -0400 (Thu, 12 Apr 2018).
Package 1182/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Risa 1.20.0 Alejandra Gonzalez-Beltran
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: Risa |
Version: 1.20.0 |
Command: rm -rf Risa.buildbin-libdir Risa.Rcheck && mkdir Risa.buildbin-libdir Risa.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Risa.buildbin-libdir Risa_1.20.0.tar.gz >Risa.Rcheck\00install.out 2>&1 && cp Risa.Rcheck\00install.out Risa-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Risa.buildbin-libdir --install="check:Risa-install.out" --force-multiarch --no-vignettes --timings Risa_1.20.0.tar.gz |
StartedAt: 2018-04-12 02:42:25 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 02:48:04 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 339.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Risa.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Risa.buildbin-libdir Risa.Rcheck && mkdir Risa.buildbin-libdir Risa.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Risa.buildbin-libdir Risa_1.20.0.tar.gz >Risa.Rcheck\00install.out 2>&1 && cp Risa.Rcheck\00install.out Risa-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Risa.buildbin-libdir --install="check:Risa-install.out" --force-multiarch --no-vignettes --timings Risa_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/Risa.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Risa/DESCRIPTION' ... OK * this is package 'Risa' version '1.20.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Risa' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getPackagesInBiocView: no visible global function definition for 'data' readISAtabZip: no visible global function definition for 'unzip' suggestBiocPackage: no visible global function definition for 'read.csv' write.assay.file: no visible global function definition for 'write.table' write.investigation.file: no visible global function definition for 'write.table' write.study.file: no visible global function definition for 'write.table' initialize,ISATab: no visible global function definition for 'count.fields' initialize,ISATab: no visible global function definition for 'read.table' initialize,ISATab : <anonymous>: no visible global function definition for 'read.table' initialize,ISATab : <anonymous> : <anonymous>: no visible global function definition for 'read.table' initialize,ISATab: no visible global function definition for 'na.omit' Undefined global functions or variables: count.fields data na.omit read.csv read.table unzip write.table Consider adding importFrom("stats", "na.omit") importFrom("utils", "count.fields", "data", "read.csv", "read.table", "unzip", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed Risa-package 0.71 0.16 5.56 processAssayXcmsSet 0.36 0.00 27.42 processAssayXcmsSet.1factor 0.14 0.02 20.78 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed processAssayXcmsSet 0.40 0.00 28.62 processAssayXcmsSet.1factor 0.21 0.02 30.61 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/Risa.Rcheck/00check.log' for details.
Risa.Rcheck/00install.out
install for i386 * installing *source* package 'Risa' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'Risa' finding HTML links ... done AssayTab-class html ISAtab-class html Risa-package html getAnnotatedDataFrameAssay html getAssayRawDataFilenames-methods html getExpressionSet html getMIAMEMetadata html getMSAssayFilenames html getMicroarrayAssayFilenames html getRawDataFilenames-methods html getStudyFilename html isMSAssay html isMicroarrayAssay html processAssayXcmsSet.1factor html processAssayXcmsSet html readISAtab html suggestBiocPackage html updateAssayMetadata html write.assay.file html write.investigation.file html write.isatab html write.study.file html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'Risa' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'Risa' as Risa_1.20.0.zip * DONE (Risa) In R CMD INSTALL In R CMD INSTALL
Risa.Rcheck/examples_i386/Risa-Ex.timings
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Risa.Rcheck/examples_x64/Risa-Ex.timings
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