Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:12:52 -0400 (Thu, 12 Apr 2018).
Package 1290/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SigCheck 2.10.0 Rory Stark
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: SigCheck |
Version: 2.10.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings SigCheck_2.10.0.tar.gz |
StartedAt: 2018-04-12 02:56:03 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 03:01:19 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 316.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SigCheck.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings SigCheck_2.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/SigCheck.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SigCheck/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SigCheck’ version ‘2.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SigCheck’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE sigCheckKnown: no visible binding for global variable ‘knownSignatures’ Undefined global functions or variables: knownSignatures * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed sigCheckAll 88.516 4.536 93.174 sigCheckKnown 44.852 0.828 45.712 sigCheckPermuted 12.272 0.396 12.683 sigCheckPlot 11.672 0.572 12.260 sigCheck 11.700 0.496 12.309 sigCheckRandom 8.252 0.416 8.680 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.6-bioc/meat/SigCheck.Rcheck/00check.log’ for details.
SigCheck.Rcheck/00install.out
* installing *source* package ‘SigCheck’ ... ** R ** data ** inst ** preparing package for lazy loading Creating a new generic function for ‘signature’ in package ‘SigCheck’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (SigCheck)
SigCheck.Rcheck/SigCheck-Ex.timings
name | user | system | elapsed | |
SigCheckObject-class | 0.000 | 0.000 | 0.003 | |
classifyResults | 0.072 | 0.000 | 0.073 | |
knownSignatures | 0.020 | 0.016 | 0.034 | |
nkiResults | 0.060 | 0.000 | 0.061 | |
sigCheck | 11.700 | 0.496 | 12.309 | |
sigCheckAll | 88.516 | 4.536 | 93.174 | |
sigCheckKnown | 44.852 | 0.828 | 45.712 | |
sigCheckPermuted | 12.272 | 0.396 | 12.683 | |
sigCheckPlot | 11.672 | 0.572 | 12.260 | |
sigCheckRandom | 8.252 | 0.416 | 8.680 | |