Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:31:43 -0400 (Thu, 12 Apr 2018).
Package 28/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
affyQCReport 1.56.0 Craig Parman
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | ![]() |
Package: affyQCReport |
Version: 1.56.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings affyQCReport_1.56.0.tar.gz |
StartedAt: 2018-04-12 00:14:16 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 00:16:37 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 141.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: affyQCReport.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings affyQCReport_1.56.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/affyQCReport.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘affyQCReport/DESCRIPTION’ ... OK * this is package ‘affyQCReport’ version ‘1.56.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘affyQCReport’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘affy’ ‘Biobase’ ‘lattice’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE borderQC1: warning in axis(1, label = ArrayIndex, at = seq(1 - 0.5, length(ArrayIndex) - 0.5), cex = 0.2): partial argument match of 'label' to 'labels' borderQC2: warning in axis(1, label = ArrayIndex, at = seq(1 - 0.5, length(ArrayIndex) - 0.5), cex = 0.2): partial argument match of 'label' to 'labels' correlationPlot: warning in axis(2, label = as.list(pretty(c, 10)), at = seq(0, 1, by = (1/(length(pretty(c, 10)) - 1)))): partial argument match of 'label' to 'labels' correlationPlot: warning in axis(4, label = as.list(attr(object@phenoData, which = "varLabels")[1:phenodepth]), at = seq(1 - 0.5, phenodepth - 0.5), las = 1): partial argument match of 'label' to 'labels' signalDist: warning in legend(((temppar$xaxp[2] - temppar$xaxp[1])/temppar$xaxp[3]) * (temppar$xaxp[3] - 1) + temppar$xaxp[1], temppar$yaxp[2], as.character(ArrayIndex), lt = 1:length(ArrayIndex), col = 1:length(ArrayIndex), cex = 0.5): partial argument match of 'lt' to 'lty' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/affyQCReport.Rcheck/00check.log’ for details.
affyQCReport.Rcheck/00install.out
* installing *source* package ‘affyQCReport’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (affyQCReport)
affyQCReport.Rcheck/affyQCReport-Ex.timings
name | user | system | elapsed | |
QCReport | 0.001 | 0.000 | 0.001 | |
affyQAReport | 0.001 | 0.000 | 0.001 | |
borderQC1 | 0.713 | 0.028 | 0.747 | |
borderQC2 | 0.615 | 0.006 | 0.638 | |
correlationPlot | 3.152 | 0.073 | 3.279 | |
signalDist | 2.486 | 0.120 | 2.652 | |
titlePage | 0.335 | 0.015 | 0.353 | |