Ti-Tai Wang
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/anamiR |
| Branch: RELEASE_3_6 |
| Last Commit: 64d53be |
| Last Changed Date: 2017-11-25 05:46:36 -0400 (Sat, 25 Nov 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:55 -0400 (Thu, 12 Apr 2018).
| Package 43/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| anamiR 1.6.1 Ti-Tai Wang
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: anamiR |
| Version: 1.6.1 |
| Command: rm -rf anamiR.buildbin-libdir anamiR.Rcheck && mkdir anamiR.buildbin-libdir anamiR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=anamiR.buildbin-libdir anamiR_1.6.1.tar.gz >anamiR.Rcheck\00install.out 2>&1 && cp anamiR.Rcheck\00install.out anamiR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=anamiR.buildbin-libdir --install="check:anamiR-install.out" --force-multiarch --no-vignettes --timings anamiR_1.6.1.tar.gz |
| StartedAt: 2018-04-11 22:11:00 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 22:47:46 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 2205.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: anamiR.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf anamiR.buildbin-libdir anamiR.Rcheck && mkdir anamiR.buildbin-libdir anamiR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=anamiR.buildbin-libdir anamiR_1.6.1.tar.gz >anamiR.Rcheck\00install.out 2>&1 && cp anamiR.Rcheck\00install.out anamiR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=anamiR.buildbin-libdir --install="check:anamiR-install.out" --force-multiarch --no-vignettes --timings anamiR_1.6.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/anamiR.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'anamiR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'anamiR' version '1.6.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'anamiR' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/GSEA_ana.Rd:11: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/GSEA_ana.Rd:14: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/differExp_continuous.Rd:10: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/differExp_discrete.Rd:12: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/enrichment.Rd:82: missing file link 'phyper'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/multi_Differ.Rd:11: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/normalization.Rd:18: missing file link 'SummarizedExperiment'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/anamiR.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 22.9Mb
sub-directories of 1Mb or more:
data 1.7Mb
doc 1.3Mb
extdata 19.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'SummarizedExperiment'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GSEA_ana: no visible binding for global variable 'msigdb.gs'
Undefined global functions or variables:
msigdb.gs
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSEA_res 8.89 0.26 219.31
enrichment 3.70 0.27 618.00
heat_vis 1.12 0.08 6.14
database_support 0.70 0.03 34.17
miR_converter 0.07 0.00 5.28
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSEA_res 11.09 0.05 218.31
enrichment 6.36 0.53 581.00
database_support 1.46 0.01 36.19
heat_vis 1.34 0.08 6.47
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/anamiR.Rcheck/00check.log'
for details.
anamiR.Rcheck/00install.out
install for i386
* installing *source* package 'anamiR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'anamiR'
finding HTML links ... done
GSEA_ana html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/GSEA_ana.Rd:11: missing file link 'SummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/GSEA_ana.Rd:14: missing file link 'SummarizedExperiment'
GSEA_res html
anamiR html
database_support html
differExp_continuous html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/differExp_continuous.Rd:10: missing file link 'SummarizedExperiment'
differExp_discrete html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/differExp_discrete.Rd:12: missing file link 'SummarizedExperiment'
egSymb html
enrichment html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/enrichment.Rd:82: missing file link 'phyper'
heat_vis html
miR_converter html
mirna html
mrna html
msigdb.gs html
multi_Differ html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/multi_Differ.Rd:11: missing file link 'SummarizedExperiment'
negative_cor html
normalization html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpURcr8H/R.INSTALL2a7843f8578a/anamiR/man/normalization.Rd:18: missing file link 'SummarizedExperiment'
pheno.mirna html
pheno.mrna html
table_pre html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'anamiR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'anamiR' as anamiR_1.6.1.zip
* DONE (anamiR)
In R CMD INSTALL
In R CMD INSTALL
|
anamiR.Rcheck/examples_i386/anamiR-Ex.timings
|
anamiR.Rcheck/examples_x64/anamiR-Ex.timings
|