Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:27:41 -0400 (Thu, 12 Apr 2018).
Package 83/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
bacon 1.6.0 Maarten van Iterson
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: bacon |
Version: 1.6.0 |
Command: rm -rf bacon.buildbin-libdir bacon.Rcheck && mkdir bacon.buildbin-libdir bacon.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bacon.buildbin-libdir bacon_1.6.0.tar.gz >bacon.Rcheck\00install.out 2>&1 && cp bacon.Rcheck\00install.out bacon-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=bacon.buildbin-libdir --install="check:bacon-install.out" --force-multiarch --no-vignettes --timings bacon_1.6.0.tar.gz |
StartedAt: 2018-04-11 22:18:56 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 22:21:17 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 141.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: bacon.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf bacon.buildbin-libdir bacon.Rcheck && mkdir bacon.buildbin-libdir bacon.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bacon.buildbin-libdir bacon_1.6.0.tar.gz >bacon.Rcheck\00install.out 2>&1 && cp bacon.Rcheck\00install.out bacon-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=bacon.buildbin-libdir --install="check:bacon-install.out" --force-multiarch --no-vignettes --timings bacon_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/bacon.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'bacon/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'bacon' version '1.6.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bacon' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .hist: no visible binding for global variable '..density..' .qq: no visible binding for global variable 'column' Undefined global functions or variables: ..density.. column * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.6-bioc/meat/bacon.buildbin-libdir/bacon/libs/i386/bacon.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed bacon 3.20 0.11 13.14 es-methods 0.17 0.03 7.39 topTable-methods 0.14 0.03 7.61 meta-methods 0.12 0.04 7.14 se-methods 0.07 0.03 7.22 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed bacon 2.34 0.05 11.73 topTable-methods 0.16 0.04 7.80 es-methods 0.14 0.04 7.11 meta-methods 0.11 0.03 7.28 se-methods 0.06 0.02 7.24 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/bacon.Rcheck/00check.log' for details.
bacon.Rcheck/00install.out
install for i386 * installing *source* package 'bacon' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o Rinit.c:12:1: warning: missing braces around initializer [-Wmissing-braces] }; ^ Rinit.c:12:1: warning: (near initialization for 'cMethods[1]') [-Wmissing-braces] C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c bacon.c -o bacon.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o bacon.dll tmp.def Rinit.o bacon.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/bacon.buildbin-libdir/bacon/libs/i386 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'bacon' finding HTML links ... done Bacon-class html bacon html bias-methods html dnormmix html es-methods html estimates-methods html fit-methods html inflation-methods html meta-methods html plot-Bacon-method html plotnormmix html posteriors-methods html pval-methods html rnormmix html se-methods html topTable-methods html traces-methods html tstat-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'bacon' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o Rinit.c:12:1: warning: missing braces around initializer [-Wmissing-braces] }; ^ Rinit.c:12:1: warning: (near initialization for 'cMethods[1]') [-Wmissing-braces] C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c bacon.c -o bacon.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o bacon.dll tmp.def Rinit.o bacon.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/bacon.buildbin-libdir/bacon/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'bacon' as bacon_1.6.0.zip * DONE (bacon) In R CMD INSTALL In R CMD INSTALL
bacon.Rcheck/tests_i386/testthat.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(bacon) Loading required package: ggplot2 Loading required package: BiocParallel Loading required package: ellipse Attaching package: 'ellipse' The following object is masked from 'package:graphics': pairs > test_check("bacon") [1] 0.914145518 -0.009654064 0.997825448 == testthat results =========================================================== OK: 3 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 2.79 0.04 2.82 |
bacon.Rcheck/tests_x64/testthat.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(bacon) Loading required package: ggplot2 Loading required package: BiocParallel Loading required package: ellipse Attaching package: 'ellipse' The following object is masked from 'package:graphics': pairs > test_check("bacon") [1] 0.914145518 -0.009654064 0.997825448 == testthat results =========================================================== OK: 3 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 2.95 0.10 3.04 |
bacon.Rcheck/examples_i386/bacon-Ex.timings
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bacon.Rcheck/examples_x64/bacon-Ex.timings
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