Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:22:12 -0400 (Thu, 12 Apr 2018).
Package 227/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
chroGPS 1.27.3 Oscar Reina
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: chroGPS |
Version: 1.27.3 |
Command: rm -rf chroGPS.buildbin-libdir chroGPS.Rcheck && mkdir chroGPS.buildbin-libdir chroGPS.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=chroGPS.buildbin-libdir chroGPS_1.27.3.tar.gz >chroGPS.Rcheck\00install.out 2>&1 && cp chroGPS.Rcheck\00install.out chroGPS-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=chroGPS.buildbin-libdir --install="check:chroGPS-install.out" --force-multiarch --no-vignettes --timings chroGPS_1.27.3.tar.gz |
StartedAt: 2018-04-11 22:53:03 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 22:56:22 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 198.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: chroGPS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf chroGPS.buildbin-libdir chroGPS.Rcheck && mkdir chroGPS.buildbin-libdir chroGPS.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=chroGPS.buildbin-libdir chroGPS_1.27.3.tar.gz >chroGPS.Rcheck\00install.out 2>&1 && cp chroGPS.Rcheck\00install.out chroGPS-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=chroGPS.buildbin-libdir --install="check:chroGPS-install.out" --force-multiarch --no-vignettes --timings chroGPS_1.27.3.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/chroGPS.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'chroGPS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'chroGPS' version '1.27.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'chroGPS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Missing or unexported object: 'changepoint::cpt.method' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE avgdistpair: no visible global function definition for '%over%' chisqdist : <anonymous>: no visible global function definition for 'RleList' chisqdist : <anonymous> : <anonymous>: no visible global function definition for 'Rle' chisqdist2: no visible global function definition for 'mclapply' contour2dDP: no visible binding for global variable 'state' gff2RDList: no visible global function definition for 'GenomicRanges' gps2xgmml: no visible global function definition for 'col2hex' realtanipair: no visible global function definition for '%over%' uniqueCount: no visible binding for global variable 'u' xgmml2d: no visible global function definition for 'xmlOutputDOM' xgmml2d: no visible global function definition for 'saveXML' xgmml3d: no visible global function definition for 'xmlOutputDOM' xgmml3d: no visible global function definition for 'saveXML' gps2xgmml,mds: no visible global function definition for 'col2hex' plot,mds-ANY: no visible global function definition for 'plot3d' plot,mds-ANY: no visible global function definition for 'text3d' plot,mds-ANY: no visible global function definition for 'spheres3d' Undefined global functions or variables: %over% GenomicRanges Rle RleList col2hex mclapply plot3d saveXML spheres3d state text3d u xmlOutputDOM * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed procrustesAdj 6.66 0.23 6.89 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed procrustesAdj 6.51 0.12 6.64 * checking for unstated dependencies in vignettes ... NOTE 'library' or 'require' call not declared from: 'gplots' * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/chroGPS.Rcheck/00check.log' for details.
chroGPS.Rcheck/00install.out
install for i386 * installing *source* package 'chroGPS' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'chroGPS' finding HTML links ... done addVar html adjustPeaks html boostMDS html clusGPS-class html clusGPS html distGPS-class html distGPS html domainDist html geneSetGPS html getURL html gff2RDList html gps2xgmml html mds-class html mds html mergeClusters html procrustesAdj html profileClusters html s2 html splitDistGPS-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'chroGPS' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'chroGPS' as chroGPS_1.27.3.zip * DONE (chroGPS) In R CMD INSTALL In R CMD INSTALL
chroGPS.Rcheck/examples_i386/chroGPS-Ex.timings
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chroGPS.Rcheck/examples_x64/chroGPS-Ex.timings
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