Mike Jiang
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/cytolib |
| Branch: RELEASE_3_6 |
| Last Commit: cc476f0 |
| Last Changed Date: 2017-11-03 18:44:20 -0400 (Fri, 03 Nov 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:18 -0400 (Thu, 12 Apr 2018).
| Package 324/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cytolib 1.0.1 Mike Jiang
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: cytolib |
| Version: 1.0.1 |
| Command: rm -rf cytolib.buildbin-libdir && mkdir cytolib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/cytolib_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=cytolib.buildbin-libdir --merge-multiarch cytolib_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL cytolib_1.0.1.zip && rm cytolib_1.0.1.tar.gz cytolib_1.0.1.zip |
| StartedAt: 2018-04-11 18:15:07 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:28:14 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 787.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf cytolib.buildbin-libdir && mkdir cytolib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/cytolib_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=cytolib.buildbin-libdir --merge-multiarch cytolib_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL cytolib_1.0.1.zip && rm cytolib_1.0.1.tar.gz cytolib_1.0.1.zip
###
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install for i386
* installing *source* package 'cytolib' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c GatingHierarchy.cpp -o GatingHierarchy.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c GatingSet.cpp -o GatingSet.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c GatingSet.pb.cc -o GatingSet.pb.o
In file included from GatingSet.pb.cc:12:0:
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = unsigned int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)7u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:413:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long long unsigned int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)6u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:414:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)15u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:415:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long long int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)16u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:416:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = float; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)2u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:417:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = double; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)1u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:418:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c POPINDICES.cpp -o POPINDICES.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c calibrationTable.cpp -o calibrationTable.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c compensation.cpp -o compensation.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c delimitedMessage.cpp -o delimitedMessage.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c ellipse2points.cpp -o ellipse2points.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c flowData.cpp -o flowData.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c gate.cpp -o gate.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c global.cpp -o global.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c nodeProperties.cpp -o nodeProperties.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c spline.cpp -o spline.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c transformation.cpp -o transformation.o
In file included from transformation.cpp:8:0:
../inst/include/cytolib/transformation.hpp: In constructor 'logTrans::logTrans()':
../inst/include/cytolib/transformation.hpp:230:12: warning: 'logTrans::T' will be initialized after [-Wreorder]
unsigned T; //top value; derived from keyword $PnR for each channel
^
../inst/include/cytolib/transformation.hpp:229:12: warning: 'unsigned int logTrans::scale' [-Wreorder]
unsigned scale;
^
transformation.cpp:273:1: warning: when initialized here [-Wreorder]
logTrans::logTrans():transformation(false,LOG),offset(0),decade(1),T(262144), scale(1){
^
In file included from transformation.cpp:8:0:
../inst/include/cytolib/transformation.hpp: In constructor 'fasinhTrans::fasinhTrans()':
../inst/include/cytolib/transformation.hpp:190:9: warning: 'fasinhTrans::length' will be initialized after [-Wreorder]
double length;//unused at this moment
^
../inst/include/cytolib/transformation.hpp:189:9: warning: 'double fasinhTrans::maxRange' [-Wreorder]
double maxRange;
^
transformation.cpp:281:1: warning: when initialized here [-Wreorder]
fasinhTrans::fasinhTrans():transformation(false,FASINH),length(256),maxRange(262144), T(262144),A(0),M(4.5){
^
mkdir -p "C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/lib/i386"
C:/Rtools/mingw_32/bin/ar rs "C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/lib/i386/libcytolib.a" GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o calibrationTable.o compensation.o delimitedMessage.o ellipse2points.o flowData.o gate.o global.o nodeProperties.o spline.o transformation.o
C:\Rtools\mingw_32\bin\ar.exe: creating C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/lib/i386/libcytolib.a
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o cytolib.dll tmp.def GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o calibrationTable.o compensation.o delimitedMessage.o ellipse2points.o flowData.o gate.o global.o nodeProperties.o spline.o transformation.o C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/lib/i386/libprotobuf.a -lws2_32 -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'cytolib'
finding HTML links ... done
LdFlags html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'cytolib' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c GatingHierarchy.cpp -o GatingHierarchy.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c GatingSet.cpp -o GatingSet.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c GatingSet.pb.cc -o GatingSet.pb.o
In file included from GatingSet.pb.cc:12:0:
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = unsigned int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)7u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:413:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long long unsigned int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)6u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:414:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)15u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:415:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = long long int; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)16u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:416:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = float; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)2u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:417:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h: In instantiation of 'static bool google::protobuf::internal::WireFormatLite::ReadPackedFixedSizePrimitive(google::protobuf::io::CodedInputStream*, google::protobuf::RepeatedField<T>*) [with CType = double; google::protobuf::internal::WireFormatLite::FieldType DeclaredType = (google::protobuf::internal::WireFormatLite::FieldType)1u]':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:418:1: required from here
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:383:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include/google/protobuf/wire_format_lite_inl.h:393:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < new_entries; ++i) {
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c POPINDICES.cpp -o POPINDICES.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c calibrationTable.cpp -o calibrationTable.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c compensation.cpp -o compensation.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c delimitedMessage.cpp -o delimitedMessage.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c ellipse2points.cpp -o ellipse2points.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c flowData.cpp -o flowData.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c gate.cpp -o gate.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c global.cpp -o global.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c nodeProperties.cpp -o nodeProperties.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c spline.cpp -o spline.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c transformation.cpp -o transformation.o
In file included from transformation.cpp:8:0:
../inst/include/cytolib/transformation.hpp: In constructor 'logTrans::logTrans()':
../inst/include/cytolib/transformation.hpp:230:12: warning: 'logTrans::T' will be initialized after [-Wreorder]
unsigned T; //top value; derived from keyword $PnR for each channel
^
../inst/include/cytolib/transformation.hpp:229:12: warning: 'unsigned int logTrans::scale' [-Wreorder]
unsigned scale;
^
transformation.cpp:273:1: warning: when initialized here [-Wreorder]
logTrans::logTrans():transformation(false,LOG),offset(0),decade(1),T(262144), scale(1){
^
In file included from transformation.cpp:8:0:
../inst/include/cytolib/transformation.hpp: In constructor 'fasinhTrans::fasinhTrans()':
../inst/include/cytolib/transformation.hpp:190:9: warning: 'fasinhTrans::length' will be initialized after [-Wreorder]
double length;//unused at this moment
^
../inst/include/cytolib/transformation.hpp:189:9: warning: 'double fasinhTrans::maxRange' [-Wreorder]
double maxRange;
^
transformation.cpp:281:1: warning: when initialized here [-Wreorder]
fasinhTrans::fasinhTrans():transformation(false,FASINH),length(256),maxRange(262144), T(262144),A(0),M(4.5){
^
mkdir -p "C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/lib/x64"
C:/Rtools/mingw_64/bin/ar rs "C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/lib/x64/libcytolib.a" GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o calibrationTable.o compensation.o delimitedMessage.o ellipse2points.o flowData.o gate.o global.o nodeProperties.o spline.o transformation.o
C:\Rtools\mingw_64\bin\ar.exe: creating C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/lib/x64/libcytolib.a
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o cytolib.dll tmp.def GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o calibrationTable.o compensation.o delimitedMessage.o ellipse2points.o flowData.o gate.o global.o nodeProperties.o spline.o transformation.o C:/Users/biocbuild/bbs-3.6-bioc/R/library/RProtoBufLib/lib/x64/libprotobuf.a -lws2_32 -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/cytolib.buildbin-libdir/cytolib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cytolib' as cytolib_1.0.1.zip
* DONE (cytolib)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'cytolib' successfully unpacked and MD5 sums checked
In R CMD INSTALL