Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:33:28 -0400 (Thu, 12 Apr 2018).
Package 505/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
frma 1.30.1 Matthew N. McCall
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | ![]() |
Package: frma |
Version: 1.30.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings frma_1.30.1.tar.gz |
StartedAt: 2018-04-12 03:53:56 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 03:57:25 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 208.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: frma.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings frma_1.30.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/frma.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘frma/DESCRIPTION’ ... OK * this is package ‘frma’ version ‘1.30.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘frma’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘Biobase’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE GNUSE: no visible binding for global variable ‘median’ GNUSE: no visible binding for global variable ‘quantile’ GNUSE: no visible global function definition for ‘boxplot’ barcode: no visible global function definition for ‘pnorm’ batchFit: no visible global function definition for ‘median’ coerce<-,frmaExpressionSet-ExpressionSet: no visible global function definition for ‘slot<-’ coerce<-,frmaExpressionSet-ExpressionSet: no visible global function definition for ‘slot’ randomeffects<-,frmaExpressionSet: no visible global function definition for ‘validObject’ residuals<-,frmaExpressionSet: no visible global function definition for ‘validObject’ se.exprs<-,ExpressionSet: no visible global function definition for ‘validObject’ se.exprs<-,frmaExpressionSet: no visible global function definition for ‘validObject’ weights<-,frmaExpressionSet: no visible global function definition for ‘validObject’ Undefined global functions or variables: boxplot median pnorm quantile slot slot<- validObject Consider adding importFrom("graphics", "boxplot") importFrom("methods", "slot", "slot<-", "validObject") importFrom("stats", "median", "pnorm", "quantile") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed GNUSE 15.065 2.421 17.768 barcode 11.725 2.355 14.258 frma 11.185 2.426 13.793 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/frma.Rcheck/00check.log’ for details.
frma.Rcheck/00install.out
* installing *source* package ‘frma’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (frma)
frma.Rcheck/frma-Ex.timings
name | user | system | elapsed | |
GNUSE | 15.065 | 2.421 | 17.768 | |
barcode | 11.725 | 2.355 | 14.258 | |
frma | 11.185 | 2.426 | 13.793 | |
frmaExpressionSet-class | 0.208 | 0.000 | 0.211 | |