Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:15:23 -0400 (Thu, 12 Apr 2018).
Package 523/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gCrisprTools 1.6.0 Peter Haverty
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: gCrisprTools |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings gCrisprTools_1.6.0.tar.gz |
StartedAt: 2018-04-11 23:39:29 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 23:45:27 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 358.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: gCrisprTools.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings gCrisprTools_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/gCrisprTools.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘gCrisprTools/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gCrisprTools’ version ‘1.6.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gCrisprTools’ can be installed ... OK * checking installed package size ... NOTE installed size is 9.2Mb sub-directories of 1Mb or more: data 2.3Mb doc 1.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed ct.PantherPathwayEnrichment 86.228 2.044 93.128 ct.guideCDF 29.444 0.152 29.614 ct.makeReport 21.568 0.644 22.237 ct.makeContrastReport 11.932 0.816 13.017 ct.makeQCReport 7.820 0.340 8.176 ct.GCbias 6.716 0.104 6.827 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘unit.tests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.6-bioc/meat/gCrisprTools.Rcheck/00check.log’ for details.
gCrisprTools.Rcheck/00install.out
* installing *source* package ‘gCrisprTools’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (gCrisprTools)
gCrisprTools.Rcheck/tests/unit.tests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > #require("BiocGenerics", quietly = TRUE) > BiocGenerics:::testPackage("gCrisprTools") PANTHER.db version 1.0.4 RUNIT TEST PROTOCOL -- Wed Apr 11 23:45:24 2018 *********************************************** Number of test functions: 0 Number of errors: 0 Number of failures: 0 1 Test Suite : gCrisprTools RUnit Tests - 0 test functions, 0 errors, 0 failures Number of test functions: 0 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 3.152 0.084 3.237
gCrisprTools.Rcheck/gCrisprTools-Ex.timings
name | user | system | elapsed | |
aln | 0.004 | 0.000 | 0.004 | |
ann | 0.080 | 0.004 | 0.083 | |
ct.DirectionalTests | 0.296 | 0.064 | 0.358 | |
ct.GCbias | 6.716 | 0.104 | 6.827 | |
ct.PRC | 0.944 | 0.012 | 0.956 | |
ct.PantherPathwayEnrichment | 86.228 | 2.044 | 93.128 | |
ct.ROC | 0.184 | 0.004 | 0.190 | |
ct.RRAaPvals | 0.352 | 0.016 | 0.368 | |
ct.RRAalpha | 0.276 | 0.004 | 0.280 | |
ct.alignmentChart | 0.000 | 0.004 | 0.004 | |
ct.alphaBeta | 0.004 | 0.004 | 0.016 | |
ct.ecdf | 0.000 | 0.000 | 0.001 | |
ct.filterReads | 0.244 | 0.040 | 0.283 | |
ct.gRNARankByReplicate | 0.436 | 0.028 | 0.464 | |
ct.generateResults | 1.044 | 0.028 | 1.075 | |
ct.guideCDF | 29.444 | 0.152 | 29.614 | |
ct.inputCheck | 0.084 | 0.000 | 0.081 | |
ct.makeContrastReport | 11.932 | 0.816 | 13.017 | |
ct.makeQCReport | 7.820 | 0.340 | 8.176 | |
ct.makeReport | 21.568 | 0.644 | 22.237 | |
ct.normalizeBySlope | 1.228 | 0.036 | 1.267 | |
ct.normalizeGuides | 3.804 | 0.164 | 3.975 | |
ct.normalizeMedians | 0.804 | 0.028 | 0.833 | |
ct.normalizeNTC | 0.988 | 0.028 | 1.019 | |
ct.normalizeSpline | 1.080 | 0.044 | 1.123 | |
ct.prepareAnnotation | 0.524 | 0.024 | 0.549 | |
ct.preprocessFit | 2.080 | 0.164 | 2.247 | |
ct.rawCountDensities | 0.120 | 0.004 | 0.126 | |
ct.resultCheck | 0.096 | 0.004 | 0.102 | |
ct.stackGuides | 4.944 | 0.044 | 5.000 | |
ct.targetSetEnrichment | 0.132 | 0.000 | 0.131 | |
ct.topTargets | 0.4 | 0.0 | 0.4 | |
ct.viewControls | 0.236 | 0.000 | 0.238 | |
ct.viewGuides | 0.312 | 0.004 | 0.316 | |
es | 0.072 | 0.000 | 0.074 | |
essential.genes | 0.000 | 0.000 | 0.002 | |
fit | 0.208 | 0.000 | 0.210 | |
resultsDF | 0.100 | 0.008 | 0.110 | |