Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:15:43 -0400 (Thu, 12 Apr 2018).
Package 519/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gcapc 1.2.0 Mingxiang Teng
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: gcapc |
Version: 1.2.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings gcapc_1.2.0.tar.gz |
StartedAt: 2018-04-11 23:38:54 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 23:45:30 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 396.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: gcapc.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings gcapc_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/gcapc.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘gcapc/DESCRIPTION’ ... OK * this is package ‘gcapc’ version ‘1.2.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gcapc’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed peaksCAT 87.516 0.380 87.971 refinePeaks 49.164 0.124 49.329 gcapcPeaks 45.220 0.172 45.419 gcEffects 42.156 0.328 51.501 bindWidth 7.716 0.052 7.777 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
gcapc.Rcheck/00install.out
* installing *source* package ‘gcapc’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (gcapc)
gcapc.Rcheck/gcapc-Ex.timings
name | user | system | elapsed | |
bindWidth | 7.716 | 0.052 | 7.777 | |
gcEffects | 42.156 | 0.328 | 51.501 | |
gcapcPeaks | 45.220 | 0.172 | 45.419 | |
peaksCAT | 87.516 | 0.380 | 87.971 | |
read5endCoverage | 0.356 | 0.008 | 0.363 | |
refinePeaks | 49.164 | 0.124 | 49.329 | |