Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:25:34 -0400 (Thu, 12 Apr 2018).
Package 579/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gespeR 1.10.1 Fabian Schmich
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ WARNINGS ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | ![]() |
Package: gespeR |
Version: 1.10.1 |
Command: rm -rf gespeR.buildbin-libdir gespeR.Rcheck && mkdir gespeR.buildbin-libdir gespeR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gespeR.buildbin-libdir gespeR_1.10.1.tar.gz >gespeR.Rcheck\00install.out 2>&1 && cp gespeR.Rcheck\00install.out gespeR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=gespeR.buildbin-libdir --install="check:gespeR-install.out" --force-multiarch --no-vignettes --timings gespeR_1.10.1.tar.gz |
StartedAt: 2018-04-12 00:22:40 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 00:28:59 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 379.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: gespeR.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gespeR.buildbin-libdir gespeR.Rcheck && mkdir gespeR.buildbin-libdir gespeR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=gespeR.buildbin-libdir gespeR_1.10.1.tar.gz >gespeR.Rcheck\00install.out 2>&1 && cp gespeR.Rcheck\00install.out gespeR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=gespeR.buildbin-libdir --install="check:gespeR-install.out" --force-multiarch --no-vignettes --timings gespeR_1.10.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/gespeR.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'gespeR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'gespeR' version '1.10.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gespeR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .gespeR.cv: no visible global function definition for 'coef' .select.model: no visible global function definition for 'predict' concordance: no visible global function definition for 'cor' lasso.rand: no visible global function definition for 'runif' plot.gespeR: no visible global function definition for 'hist' stability.selection: no visible global function definition for 'lm' Phenotypes,character: no visible global function definition for 'read.delim' Undefined global functions or variables: coef cor hist lm predict read.delim runif Consider adding importFrom("graphics", "hist") importFrom("stats", "coef", "cor", "lm", "predict", "runif") importFrom("utils", "read.delim") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'c,Phenotypes-method': \S4method{c}{Phenotypes} Code: function(x, ...) Docs: function(x, ..., recursive = FALSE) Argument names in docs not in code: recursive * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed gespeR-package 7.49 0.25 38.84 gespeR-class 0.64 0.00 7.94 stability-methods 0.19 0.02 7.00 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed gespeR-package 10.78 0.26 48.05 gespeR-class 0.55 0.00 9.21 stability-methods 0.17 0.00 9.09 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/gespeR.Rcheck/00check.log' for details.
gespeR.Rcheck/00install.out
install for i386 * installing *source* package 'gespeR' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'gespeR' finding HTML links ... done Phenotypes-class html TargetRelations-class html annotate.gsp-methods html as.data.frame-Phenotypes-method html as.data.frame.concordance html c-Phenotypes-method html concordance html dim-Phenotypes-method html gespeR-class html finding level-2 HTML links ... done gespeR-package html gspssp-methods html join-methods html lasso.rand html na.rem-methods html path-methods html plot.Phenotypes html plot.concordance html plot.gespeR html rbo html scores-methods html simData html stability-methods html stability.selection html stabilityfits html sub-Phenotypes-ANY-ANY-ANY-method html sub-TargetRelations-ANY-ANY-ANY-method html target-relations-methods html trmatrix-methods html values-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'gespeR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'gespeR' as gespeR_1.10.1.zip * DONE (gespeR) In R CMD INSTALL In R CMD INSTALL
gespeR.Rcheck/examples_i386/gespeR-Ex.timings
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gespeR.Rcheck/examples_x64/gespeR-Ex.timings
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