Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:36:00 -0400 (Thu, 12 Apr 2018).
Package 660/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
hpar 1.20.0 Laurent Gatto
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | ![]() |
Package: hpar |
Version: 1.20.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings hpar_1.20.0.tar.gz |
StartedAt: 2018-04-12 05:04:54 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 05:05:23 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 28.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: hpar.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings hpar_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/hpar.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘hpar/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘hpar’ version ‘1.20.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hpar’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
hpar.Rcheck/00install.out
* installing *source* package ‘hpar’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (hpar)
hpar.Rcheck/tests/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # setting R_TESTS to empty string because of > # https://github.com/hadley/testthat/issues/144 > # revert this when that issue in R is fixed. > Sys.setenv("R_TESTS" = "") > library(testthat) > library(hpar) This is hpar version 1.20.0, based on the Human Protein Atlas Version: 16.1 Release data: 2017.01.31 Ensembl build: 83.38 See '?hpar' or 'vignette('hpar')' for details. > > test_check("hpar") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 18 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 1.499 0.207 2.223 LSOpenURLsWithRole() failed with error -10810 for the URL http://www.proteinatlas.org/ENSG00000000003. LSOpenURLsWithRole() failed with error -10810 for the URL http://www.proteinatlas.org/ENSG00000000003. LSOpenURLsWithRole() failed with error -10810 for the URL http://www.proteinatlas.org/ENSG00000000005.
hpar.Rcheck/hpar-Ex.timings
name | user | system | elapsed | |
getHpa | 1.489 | 0.188 | 1.722 | |
getHpaDate | 0.000 | 0.000 | 0.001 | |
hpar | 0.965 | 0.107 | 1.093 | |
setHparOptions | 0.001 | 0.001 | 0.002 | |