Package: iCheck

Version: 1.8.0

Command: rm -rf iCheck.buildbin-libdir iCheck.Rcheck && mkdir iCheck.buildbin-libdir iCheck.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iCheck.buildbin-libdir iCheck_1.8.0.tar.gz >iCheck.Rcheck\00install.out 2>&1 && cp iCheck.Rcheck\00install.out iCheck-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=iCheck.buildbin-libdir --install="check:iCheck-install.out" --force-multiarch --no-vignettes --timings iCheck_1.8.0.tar.gz

StartedAt: 2018-04-12 00:47:03 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 00:53:01 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 357.5 seconds

RetCode: 0

Status:  OK

CheckDir: iCheck.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf iCheck.buildbin-libdir iCheck.Rcheck && mkdir iCheck.buildbin-libdir iCheck.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iCheck.buildbin-libdir iCheck_1.8.0.tar.gz >iCheck.Rcheck\00install.out 2>&1 && cp iCheck.Rcheck\00install.out iCheck-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=iCheck.buildbin-libdir --install="check:iCheck-install.out" --force-multiarch --no-vignettes --timings iCheck_1.8.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/iCheck.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'iCheck/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iCheck' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'iCheck' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'iCheck' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'iCheck'
    finding HTML links ... done
    LumiBatch2Table                         html  
    R2PlotFunc                              html  
    finding level-2 HTML links ... done

    boxPlots                                html  
    densityPlots                            html  
    genExprSet                              html  
    genSimData.BayesNormal                  html  
    getPCAFunc                              html  
    glmWrapper                              html  
    lkhrWrapper                             html  
    lmFitPaired                             html  
    lmFitWrapper                            html  
    pca2DPlot                               html  
    pca3DPlot                               html  
    plotCurves                              html  
    plotQCCurves                            html  
    plotSamplep95p05                        html  
    quantilePlot                            html  
    scatterPlots                            html  
    sortExpressionSet                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'iCheck' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCheck' as iCheck_1.8.0.zip
* DONE (iCheck)
In R CMD INSTALL
In R CMD INSTALL