Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:20:01 -0400 (Thu, 12 Apr 2018).
Package 676/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
iChip 1.32.0 Qianxing Mo
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: iChip |
Version: 1.32.0 |
Command: rm -rf iChip.buildbin-libdir iChip.Rcheck && mkdir iChip.buildbin-libdir iChip.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iChip.buildbin-libdir iChip_1.32.0.tar.gz >iChip.Rcheck\00install.out 2>&1 && cp iChip.Rcheck\00install.out iChip-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=iChip.buildbin-libdir --install="check:iChip-install.out" --force-multiarch --no-vignettes --timings iChip_1.32.0.tar.gz |
StartedAt: 2018-04-12 00:47:17 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 00:48:31 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 73.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: iChip.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf iChip.buildbin-libdir iChip.Rcheck && mkdir iChip.buildbin-libdir iChip.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iChip.buildbin-libdir iChip_1.32.0.tar.gz >iChip.Rcheck\00install.out 2>&1 && cp iChip.Rcheck\00install.out iChip-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=iChip.buildbin-libdir --install="check:iChip-install.out" --force-multiarch --no-vignettes --timings iChip_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/iChip.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'iChip/DESCRIPTION' ... OK * this is package 'iChip' version '1.32.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'iChip' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.6-bioc/meat/iChip.buildbin-libdir/iChip/libs/i386/iChip.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed iChip2 8.69 0.02 8.70 iChip1 7.91 0.03 7.94 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed iChip2 7.75 0 7.75 iChip1 6.77 0 6.76 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/iChip.Rcheck/00check.log' for details.
iChip.Rcheck/00install.out
install for i386 * installing *source* package 'iChip' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c iChip.c -o iChip.o iChip.c: In function 'iChip2': iChip.c:24:69: warning: unused variable 'sdsignal' [-Wunused-variable] double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal; ^ iChip.c:24:61: warning: unused variable 'sdnoise' [-Wunused-variable] double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal; ^ iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable] int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum; ^ iChip.c: In function 'iChip1': iChip.c:188:20: warning: unused variable 'j' [-Wunused-variable] int sampleSize,i,j,r,nnoise,nsignal,state,nrowm1,sumxx,rm1; ^ C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/iChip.buildbin-libdir/iChip/libs/i386 ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'iChip' finding HTML links ... done enrichreg html iChip1 html iChip2 html lmtstat html oct4 html p53 html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'iChip' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c iChip.c -o iChip.o iChip.c: In function 'iChip2': iChip.c:24:69: warning: unused variable 'sdsignal' [-Wunused-variable] double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal; ^ iChip.c:24:61: warning: unused variable 'sdnoise' [-Wunused-variable] double *score2,z0,z1,p,meanScore,varScore,sdScore,mean3sd,sdnoise,sdsignal; ^ iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable] int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum; ^ iChip.c: In function 'iChip1': iChip.c:188:20: warning: unused variable 'j' [-Wunused-variable] int sampleSize,i,j,r,nnoise,nsignal,state,nrowm1,sumxx,rm1; ^ C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/iChip.buildbin-libdir/iChip/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'iChip' as iChip_1.32.0.zip * DONE (iChip) In R CMD INSTALL In R CMD INSTALL
iChip.Rcheck/examples_i386/iChip-Ex.timings
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iChip.Rcheck/examples_x64/iChip-Ex.timings
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