Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:26:35 -0400 (Thu, 12 Apr 2018).
Package 867/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
miRLAB 1.8.0 Thuc Duy Le
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: miRLAB |
Version: 1.8.0 |
Command: rm -rf miRLAB.buildbin-libdir miRLAB.Rcheck && mkdir miRLAB.buildbin-libdir miRLAB.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRLAB.buildbin-libdir miRLAB_1.8.0.tar.gz >miRLAB.Rcheck\00install.out 2>&1 && cp miRLAB.Rcheck\00install.out miRLAB-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=miRLAB.buildbin-libdir --install="check:miRLAB-install.out" --force-multiarch --no-vignettes --timings miRLAB_1.8.0.tar.gz |
StartedAt: 2018-04-12 01:31:30 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:35:16 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 226.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: miRLAB.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf miRLAB.buildbin-libdir miRLAB.Rcheck && mkdir miRLAB.buildbin-libdir miRLAB.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRLAB.buildbin-libdir miRLAB_1.8.0.tar.gz >miRLAB.Rcheck\00install.out 2>&1 && cp miRLAB.Rcheck\00install.out miRLAB-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=miRLAB.buildbin-libdir --install="check:miRLAB-install.out" --force-multiarch --no-vignettes --timings miRLAB_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/miRLAB.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'miRLAB/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'miRLAB' version '1.8.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'miRLAB' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CheckGeneSymbol: no visible global function definition for 'data' DiffExpAnalysis: no visible global function definition for 'read.csv' DiffExpAnalysis: no visible global function definition for 'write.csv' DownloadRNASeqData: no visible global function definition for 'write.table' DownloadmiRNASeqData: no visible global function definition for 'write.table' GOBPenrichment: no visible global function definition for 'new' GOBPenrichment: no visible global function definition for 'p.adjust' IDA: no visible global function definition for 'cor' IDA: no visible global function definition for 'cov' KEGGenrichment: no visible global function definition for 'new' KEGGenrichment: no visible global function definition for 'p.adjust' Kendall: no visible global function definition for 'cor' Pearson: no visible global function definition for 'cor' ProcessRNASeqData: no visible global function definition for 'read.table' ProcessRNASeqData: no visible global function definition for 'png' ProcessRNASeqData: no visible global function definition for 'par' ProcessRNASeqData: no visible global function definition for 'boxplot' ProcessRNASeqData: no visible global function definition for 'dev.off' ProcessRNASeqData: no visible global function definition for 'write.table' ProcessmiRNASeqData: no visible global function definition for 'read.table' ProcessmiRNASeqData: no visible global function definition for 'write.table' RDCParameter: no visible global function definition for 'rnorm' RDCParameter: no visible global function definition for 'cancor' Read: no visible global function definition for 'read.csv' ReadExtResult: no visible global function definition for 'read.csv' Spearman: no visible global function definition for 'cor' ValidateAll: no visible global function definition for 'phyper' Validation: no visible global function definition for 'read.csv' ValidationT: no visible global function definition for 'read.csv' Zscore: no visible global function definition for 'read.csv' Zscore: no visible global function definition for 'median' convert: no visible global function definition for 'read.csv' convert: no visible global function definition for 'write.table' readHeader: no visible global function definition for 'read.csv' urlReadTable: no visible global function definition for 'read.table' Undefined global functions or variables: boxplot cancor cor cov data dev.off median new p.adjust par phyper png read.csv read.table rnorm write.csv write.table Consider adding importFrom("grDevices", "dev.off", "png") importFrom("graphics", "boxplot", "par") importFrom("methods", "new") importFrom("stats", "cancor", "cor", "cov", "median", "p.adjust", "phyper", "rnorm") importFrom("utils", "data", "read.csv", "read.table", "write.csv", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/miRLAB.Rcheck/00check.log' for details.
miRLAB.Rcheck/00install.out
install for i386 * installing *source* package 'miRLAB' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'miRLAB' finding HTML links ... done Borda html BordaTopk html Dcov html DiffExpAnalysis html Elastic html Extopk html GOBPenrichment html Hoeffding html IDA html ImputeNormData html KEGGenrichment html Kendall html Lasso html MI html Pearson html ProMISe html RDC html Read html ReadExtResult html Spearman html Standardise html ValidateAll html Validation html ValidationT html Zscore html bRank html convert html experiment html filterAndCompare html getData html miRLAB-package html readHeader html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'miRLAB' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'miRLAB' as miRLAB_1.8.0.zip * DONE (miRLAB) In R CMD INSTALL In R CMD INSTALL
miRLAB.Rcheck/tests_i386/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("miRLAB") RUNIT TEST PROTOCOL -- Thu Apr 12 01:35:05 2018 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : miRLAB RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 5.34 0.20 5.54 |
miRLAB.Rcheck/tests_x64/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("miRLAB") RUNIT TEST PROTOCOL -- Thu Apr 12 01:35:12 2018 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : miRLAB RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 6.96 0.17 7.14 |
miRLAB.Rcheck/examples_i386/miRLAB-Ex.timings
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miRLAB.Rcheck/examples_x64/miRLAB-Ex.timings
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