Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:46 -0400 (Thu, 12 Apr 2018).
Package 975/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ontoProc 1.0.0 VJ Carey
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: ontoProc |
Version: 1.0.0 |
Command: rm -rf ontoProc.buildbin-libdir ontoProc.Rcheck && mkdir ontoProc.buildbin-libdir ontoProc.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ontoProc.buildbin-libdir ontoProc_1.0.0.tar.gz >ontoProc.Rcheck\00install.out 2>&1 && cp ontoProc.Rcheck\00install.out ontoProc-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ontoProc.buildbin-libdir --install="check:ontoProc-install.out" --force-multiarch --no-vignettes --timings ontoProc_1.0.0.tar.gz |
StartedAt: 2018-04-12 01:55:43 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:58:47 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 184.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ontoProc.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ontoProc.buildbin-libdir ontoProc.Rcheck && mkdir ontoProc.buildbin-libdir ontoProc.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ontoProc.buildbin-libdir ontoProc_1.0.0.tar.gz >ontoProc.Rcheck\00install.out 2>&1 && cp ontoProc.Rcheck\00install.out ontoProc-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ontoProc.buildbin-libdir --install="check:ontoProc-install.out" --force-multiarch --no-vignettes --timings ontoProc_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ontoProc.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ontoProc/DESCRIPTION' ... OK * this is package 'ontoProc' version '1.0.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ontoProc' can be installed ... OK * checking installed package size ... NOTE installed size is 23.0Mb sub-directories of 1Mb or more: ontoRda 22.3Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed fastGrep 17.07 0.61 17.69 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed fastGrep 19.41 0.28 19.68 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'test.R' OK ** running tests for arch 'x64' ... Running 'test.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ontoProc.Rcheck/00check.log' for details.
ontoProc.Rcheck/00install.out
install for i386 * installing *source* package 'ontoProc' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'ontoProc' finding HTML links ... done TermSet-class html allGOterms html c-TermSet-method html cellTypeToGO html demoApp html fastGrep html getCellOnto html makeSelectInput html secLevGen html siblings_TAG html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'ontoProc' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ontoProc' as ontoProc_1.0.0.zip * DONE (ontoProc) In R CMD INSTALL In R CMD INSTALL
ontoProc.Rcheck/tests_i386/test.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library(ontoProc) Loading required package: ontologyIndex > library(testthat) > > test_check("ontoProc") == testthat results =========================================================== OK: 7 SKIPPED: 0 FAILED: 0 > > > proc.time() user system elapsed 8.64 0.21 8.84 |
ontoProc.Rcheck/tests_x64/test.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library(ontoProc) Loading required package: ontologyIndex > library(testthat) > > test_check("ontoProc") == testthat results =========================================================== OK: 7 SKIPPED: 0 FAILED: 0 > > > proc.time() user system elapsed 11.56 0.18 11.73 |
ontoProc.Rcheck/examples_i386/ontoProc-Ex.timings
|
ontoProc.Rcheck/examples_x64/ontoProc-Ex.timings
|