Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:42:19 -0400 (Thu, 12 Apr 2018).
Package 1253/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
scater 1.6.3 Davis McCarthy
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | ![]() |
Package: scater |
Version: 1.6.3 |
Command: rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scater_1.6.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scater.buildbin-libdir |
StartedAt: 2018-04-12 12:13:00 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 12:14:10 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 70.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: scater_1.6.3.tgz |
PackageFileSize: 7.465 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scater_1.6.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scater.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=scater.buildbin-libdir scater_1.6.3.tar.gz' >>>>>>> * installing *source* package ‘scater’ ... ** libs clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include" -I/usr/local/include -fPIC -Wall -g -O2 -c calc_exprs.cpp -o calc_exprs.o In file included from calc_exprs.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:106:13: warning: 'H5::Attribute::iterateAttrs' hides overloaded virtual function [-Woverloaded-virtual] int iterateAttrs() { return 0; } ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:82:21: note: hidden overloaded virtual function 'H5::H5Location::iterateAttrs' declared here: different number of parameters (3 vs 0) virtual int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL); ^ In file included from calc_exprs.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:109:14: warning: 'H5::Attribute::renameAttr' hides overloaded virtual functions [-Woverloaded-virtual] void renameAttr() {} ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:89:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const char* oldname, const char* newname) const; ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:90:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; ^ calc_exprs.cpp:37:21: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (current < 0 || current > nsfsets) { ˜˜˜˜˜˜˜ ^ ˜ 3 warnings generated. clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include" -I/usr/local/include -fPIC -Wall -g -O2 -c calc_top_features.cpp -o calc_top_features.o In file included from calc_top_features.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:106:13: warning: 'H5::Attribute::iterateAttrs' hides overloaded virtual function [-Woverloaded-virtual] int iterateAttrs() { return 0; } ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:82:21: note: hidden overloaded virtual function 'H5::H5Location::iterateAttrs' declared here: different number of parameters (3 vs 0) virtual int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL); ^ In file included from calc_top_features.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:109:14: warning: 'H5::Attribute::renameAttr' hides overloaded virtual functions [-Woverloaded-virtual] void renameAttr() {} ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:89:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const char* oldname, const char* newname) const; ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:90:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; ^ 2 warnings generated. clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include" -I/usr/local/include -fPIC -Wall -g -O2 -c calc_variance.cpp -o calc_variance.o In file included from calc_variance.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:106:13: warning: 'H5::Attribute::iterateAttrs' hides overloaded virtual function [-Woverloaded-virtual] int iterateAttrs() { return 0; } ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:82:21: note: hidden overloaded virtual function 'H5::H5Location::iterateAttrs' declared here: different number of parameters (3 vs 0) virtual int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL); ^ In file included from calc_variance.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:109:14: warning: 'H5::Attribute::renameAttr' hides overloaded virtual functions [-Woverloaded-virtual] void renameAttr() {} ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:89:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const char* oldname, const char* newname) const; ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:90:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; ^ 2 warnings generated. clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include" -I/usr/local/include -fPIC -Wall -g -O2 -c downsample_matrix.cpp -o downsample_matrix.o In file included from downsample_matrix.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:106:13: warning: 'H5::Attribute::iterateAttrs' hides overloaded virtual function [-Woverloaded-virtual] int iterateAttrs() { return 0; } ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:82:21: note: hidden overloaded virtual function 'H5::H5Location::iterateAttrs' declared here: different number of parameters (3 vs 0) virtual int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL); ^ In file included from downsample_matrix.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:109:14: warning: 'H5::Attribute::renameAttr' hides overloaded virtual functions [-Woverloaded-virtual] void renameAttr() {} ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:89:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const char* oldname, const char* newname) const; ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:90:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; ^ 2 warnings generated. clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o In file included from init.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:106:13: warning: 'H5::Attribute::iterateAttrs' hides overloaded virtual function [-Woverloaded-virtual] int iterateAttrs() { return 0; } ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:82:21: note: hidden overloaded virtual function 'H5::H5Location::iterateAttrs' declared here: different number of parameters (3 vs 0) virtual int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL); ^ In file included from init.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:109:14: warning: 'H5::Attribute::renameAttr' hides overloaded virtual functions [-Woverloaded-virtual] void renameAttr() {} ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:89:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const char* oldname, const char* newname) const; ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:90:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; ^ 2 warnings generated. clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include" -I/usr/local/include -fPIC -Wall -g -O2 -c margin_summary.cpp -o margin_summary.o In file included from margin_summary.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:106:13: warning: 'H5::Attribute::iterateAttrs' hides overloaded virtual function [-Woverloaded-virtual] int iterateAttrs() { return 0; } ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:82:21: note: hidden overloaded virtual function 'H5::H5Location::iterateAttrs' declared here: different number of parameters (3 vs 0) virtual int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL); ^ In file included from margin_summary.cpp:1: In file included from ./scater.h:5: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/integer_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/LIN_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/Input_matrix.h:4: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/include/beachmat/beachmat.h:17: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Cpp.h:27: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Attribute.h:109:14: warning: 'H5::Attribute::renameAttr' hides overloaded virtual functions [-Woverloaded-virtual] void renameAttr() {} ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:89:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const char* oldname, const char* newname) const; ^ /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/include/c++/H5Location.h:90:22: note: hidden overloaded virtual function 'H5::H5Location::renameAttr' declared here: different number of parameters (2 vs 0) virtual void renameAttr(const H5std_string& oldname, const H5std_string& newname) const; ^ 2 warnings generated. clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scater.so calc_exprs.o calc_top_features.o calc_variance.o downsample_matrix.o init.o margin_summary.o /Library/Frameworks/R.framework/Versions/3.4/Resources/library/beachmat/lib/libbeachmat.a /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/lib/libhdf5_cpp.a /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/lib/libhdf5.a /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rhdf5lib/lib/libsz.a -pthread -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation clang-4.0: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] installing to /Users/biocbuild/bbs-3.6-bioc/meat/scater.buildbin-libdir/scater/libs ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading Creating a new generic function for ‘mutate’ in package ‘scater’ Creating a new generic function for ‘filter’ in package ‘scater’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (scater) >>>>>>> >>>>>>> FIXING LINKS FOR scater.buildbin-libdir/scater/libs//scater.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "scater.buildbin-libdir/scater/libs//scater.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "scater.buildbin-libdir/scater/libs//scater.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "scater.buildbin-libdir/scater/libs//scater.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "scater.buildbin-libdir/scater/libs//scater.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "scater.buildbin-libdir/scater/libs//scater.so"