Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:27:06 -0400 (Thu, 12 Apr 2018).
Package 1365/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
subSeq 1.8.0 Andrew J. Bass
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: subSeq |
Version: 1.8.0 |
Command: rm -rf subSeq.buildbin-libdir subSeq.Rcheck && mkdir subSeq.buildbin-libdir subSeq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=subSeq.buildbin-libdir subSeq_1.8.0.tar.gz >subSeq.Rcheck\00install.out 2>&1 && cp subSeq.Rcheck\00install.out subSeq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=subSeq.buildbin-libdir --install="check:subSeq-install.out" --force-multiarch --no-vignettes --timings subSeq_1.8.0.tar.gz |
StartedAt: 2018-04-12 03:29:23 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 03:33:48 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 265.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: subSeq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf subSeq.buildbin-libdir subSeq.Rcheck && mkdir subSeq.buildbin-libdir subSeq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=subSeq.buildbin-libdir subSeq_1.8.0.tar.gz >subSeq.Rcheck\00install.out 2>&1 && cp subSeq.Rcheck\00install.out subSeq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=subSeq.buildbin-libdir --install="check:subSeq-install.out" --force-multiarch --no-vignettes --timings subSeq_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/subSeq.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'subSeq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'subSeq' version '1.8.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'subSeq' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE DESeq2: no visible global function definition for 'selectMethod' ccc: no visible global function definition for 'cov' ccc: no visible global function definition for 'var' generateSubsampledMatrix : <anonymous>: no visible global function definition for 'rbinom' plot.subsamples: no visible global function definition for 'plot' plot.summary.subsamples: no visible binding for global variable 'metric' plot.summary.subsamples: no visible binding for global variable 'value' plot.summary.subsamples: no visible binding for global variable 'significant' plot.summary.subsamples: no visible binding for global variable 'percent' plot.summary.subsamples: no visible binding for global variable 'method' plot.summary.subsamples: no visible binding for global variable 'depth' plot.summary.subsamples: no visible binding for global variable 'average.depth' plot.summary.subsamples: no visible binding for global variable 'average.value' subsample: no visible binding for global variable 'proportion' subsample: no visible binding for global variable 'replication' subsample: no visible binding for global variable '.' subsample: no visible binding for global variable 'pvalue' summary.subsamples: no visible binding for global variable 'count' summary.subsamples: no visible binding for global variable 'method' summary.subsamples: no visible binding for global variable 'depth' summary.subsamples: no visible binding for global variable 'pvalue' summary.subsamples: no visible binding for global variable 'proportion' summary.subsamples: no visible binding for global variable 'replication' summary.subsamples: no visible global function definition for 'p.adjust' summary.subsamples: no visible binding for global variable 'ID' summary.subsamples: no visible binding for global variable 'padj' summary.subsamples: no visible binding for global variable 'coefficient' summary.subsamples: no visible binding for global variable 'o.coefficient' summary.subsamples: no visible global function definition for 'cor' summary.subsamples: no visible binding for global variable 'valid' summary.subsamples: no visible binding for global variable 'o.lfdr' summary.subsamples: no visible binding for global variable 'o.padj' summary.subsamples: no visible binding for global variable 'significant' summary.subsamples: no visible binding for global variable 'estFDP' summary.subsamples: no visible binding for global variable 'rFDP' summary.subsamples: no visible binding for global variable 'metric' summary.subsamples: no visible binding for global variable 'value' summary.subsamples: no visible binding for global variable 'percent' voomLimma: no visible global function definition for 'model.matrix' Undefined global functions or variables: . ID average.depth average.value coefficient cor count cov depth estFDP method metric model.matrix o.coefficient o.lfdr o.padj p.adjust padj percent plot proportion pvalue rFDP rbinom replication selectMethod significant valid value var Consider adding importFrom("graphics", "plot") importFrom("methods", "selectMethod") importFrom("stats", "cor", "cov", "model.matrix", "p.adjust", "rbinom", "var") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed generateSubsampledMatrix 34.54 0.36 34.91 subsample 29.61 0.03 29.66 getSeed 27.42 0.08 27.50 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed generateSubsampledMatrix 38.22 0.27 38.50 getSeed 29.01 0.05 29.07 subsample 27.28 0.01 27.30 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/subSeq.Rcheck/00check.log' for details.
subSeq.Rcheck/00install.out
install for i386 * installing *source* package 'subSeq' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'subSeq' finding HTML links ... done combineSubsamples html generateSubsampledMatrix html getSeed html hammer html plot.subsamples html plot.summary.subsamples html ss html subsample html summary.subsamples html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'subSeq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'subSeq' as subSeq_1.8.0.zip * DONE (subSeq) In R CMD INSTALL In R CMD INSTALL
subSeq.Rcheck/examples_i386/subSeq-Ex.timings
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subSeq.Rcheck/examples_x64/subSeq-Ex.timings
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