Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:43:39 -0400 (Thu, 12 Apr 2018).
Package 1380/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
synergyfinder 1.4.2 Liye He
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: synergyfinder |
Version: 1.4.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings synergyfinder_1.4.2.tar.gz |
StartedAt: 2018-04-12 10:10:26 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 10:11:41 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 75.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: synergyfinder.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings synergyfinder_1.4.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/synergyfinder.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘synergyfinder/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘synergyfinder’ version ‘1.4.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘synergyfinder’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License components with restrictions not permitted: Mozilla Public License 2.0 + file LICENSE * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE PlotSynergy: no visible binding for global variable ‘pred.cory’ PlotSynergy: no visible binding for global variable ‘pred.corx’ Undefined global functions or variables: pred.corx pred.cory * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/synergyfinder.Rcheck/00check.log’ for details.
synergyfinder.Rcheck/00install.out
* installing *source* package ‘synergyfinder’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (synergyfinder)
synergyfinder.Rcheck/synergyfinder-Ex.timings
name | user | system | elapsed | |
BaselineCorrectionSD | 1.562 | 0.014 | 1.617 | |
Bliss | 0.265 | 0.002 | 0.275 | |
CalculateSynergy | 0.728 | 0.002 | 0.750 | |
FittingSingleDrug | 0.112 | 0.000 | 0.116 | |
HSA | 0.097 | 0.002 | 0.104 | |
Loewe | 0.286 | 0.002 | 0.298 | |
PlotDoseResponse | 3.021 | 0.026 | 3.120 | |
PlotSynergy | 0.891 | 0.026 | 0.946 | |
ReshapeData | 0.008 | 0.001 | 0.010 | |
ZIP | 0.264 | 0.013 | 0.279 | |