Paul Shannon
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/trena |
| Branch: RELEASE_3_6 |
| Last Commit: a4c7bbb |
| Last Changed Date: 2018-03-03 14:58:28 -0400 (Sat, 03 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:29:54 -0400 (Thu, 12 Apr 2018).
| Package 1419/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| trena 1.0.3 Paul Shannon
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | ERROR | [ OK ] | |||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: trena |
| Version: 1.0.3 |
| Command: cd trena.buildbin-libdir/trena && zip -r ../../trena_1.0.3.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:06:58 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:07:28 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 30.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: trena_1.0.3.zip |
| PackageFileSize: 3.16 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd trena.buildbin-libdir/trena && zip -r ../../trena_1.0.3.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: demos/ (372 bytes security) (stored 0%) adding: demos/Assess_Distributions.ipynb (332 bytes security) (deflated 42%) adding: demos/demoEnhancersDatabaseOnWhovian.R (332 bytes security) (deflated 73%) adding: demos/findPiez02RegulatorySnps.R (332 bytes security) (deflated 53%) adding: demos/findTFs.R (332 bytes security) (deflated 58%) adding: demos/runLassoSolver.R (332 bytes security) (deflated 49%) adding: demos/test.png (332 bytes security) (deflated 30%) adding: demos/trem2/ (372 bytes security) (stored 0%) adding: demos/trem2/go.R (332 bytes security) (deflated 67%) adding: DESCRIPTION (332 bytes security) (deflated 49%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: doc/TReNA_Vignette.html (332 bytes security) (deflated 65%) adding: doc/TReNA_Vignette.R (332 bytes security) (deflated 75%) adding: doc/TReNA_Vignette.Rmd (332 bytes security) (deflated 65%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/all_motifs.meme (332 bytes security) (deflated 75%) adding: extdata/ampAD.154genes.mef2cTFs.278samples.RData (332 bytes security) (deflated 0%) adding: extdata/ampAD.58genes.mef2cTFs.278samples.RData (332 bytes security) (deflated 0%) adding: extdata/human.regulatory.genes.RData (332 bytes security) (deflated 1%) adding: extdata/mef2c.neigborhood.hg38.footprints.db (332 bytes security) (deflated 83%) adding: extdata/mef2c.neighborhood.hg38.gtfAnnotation.db (332 bytes security) (deflated 79%) adding: extdata/vrk2.neigborhood.hg38.footprints.db (332 bytes security) (deflated 86%) adding: extdata/vrk2.neighborhood.hg38.gtfAnnotation.db (332 bytes security) (deflated 77%) adding: extdata/yeast-53genes-536-samples.RData (332 bytes security) (deflated 3%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 84%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/trena.rdb (332 bytes security) (deflated 2%) adding: help/trena.rdx (332 bytes security) (deflated 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 88%) adding: html/assessSnp.html (332 bytes security) (deflated 56%) adding: html/BayesSpikeSolver-class.html (332 bytes security) (deflated 45%) adding: html/BayesSpikeSolver.html (332 bytes security) (deflated 62%) adding: html/CandidateFilter-class.html (332 bytes security) (deflated 53%) adding: html/closeDatabaseConnections.html (332 bytes security) (deflated 62%) adding: html/createGeneModel.html (332 bytes security) (deflated 56%) adding: html/EnsembleSolver-class.html (332 bytes security) (deflated 42%) adding: html/EnsembleSolver.html (332 bytes security) (deflated 68%) adding: html/findMatchesByChromosomalRegion.html (332 bytes security) (deflated 57%) adding: html/FootprintFilter-class.html (332 bytes security) (deflated 58%) adding: html/FootprintFinder-class.html (332 bytes security) (deflated 67%) adding: html/GeneOntologyFilter-class.html (332 bytes security) (deflated 54%) adding: html/getAssayData.html (332 bytes security) (deflated 51%) adding: html/getAvailableSolvers.html (332 bytes security) (deflated 48%) adding: html/getCandidates-FootprintFilter-method.html (332 bytes security) (deflated 59%) adding: html/getCandidates-GeneOntologyFilter-method.html (332 bytes security) (deflated 58%) adding: html/getCandidates-HumanDHSFilter-method.html (332 bytes security) (deflated 55%) adding: html/getCandidates-VarianceFilter-method.html (332 bytes security) (deflated 57%) adding: html/getCandidates.html (332 bytes security) (deflated 58%) adding: html/getChromLoc.html (332 bytes security) (deflated 63%) adding: html/getEncodeRegulatoryTableNames-HumanDHSFilter.html (332 bytes security) (deflated 53%) adding: html/getFootprintsForGene.html (332 bytes security) (deflated 66%) adding: html/getFootprintsInRegion.html (332 bytes security) (deflated 64%) adding: html/getGeneModelTableColumnNames.html (332 bytes security) (deflated 53%) adding: html/getGenePromoterRegion.html (332 bytes security) (deflated 66%) adding: html/getGtfGeneBioTypes.html (332 bytes security) (deflated 61%) adding: html/getGtfMoleculeTypes.html (332 bytes security) (deflated 62%) adding: html/getPfms.html (332 bytes security) (deflated 49%) adding: html/getPromoterRegionsAllGenes.html (332 bytes security) (deflated 64%) adding: html/getProximalPromoter.html (332 bytes security) (deflated 57%) adding: html/getRegulators.html (332 bytes security) (deflated 50%) adding: html/getRegulatoryChromosomalRegions.html (332 bytes security) (deflated 62%) adding: html/getRegulatoryRegions.html (332 bytes security) (deflated 58%) adding: html/getRegulatoryTableColumnNames.html (332 bytes security) (deflated 54%) adding: html/getSequence.html (332 bytes security) (deflated 54%) adding: html/getSolverNames.html (332 bytes security) (deflated 51%) adding: html/getTarget.html (332 bytes security) (deflated 50%) adding: html/HumanDHSFilter-class.html (332 bytes security) (deflated 61%) adding: html/LassoPVSolver-class.html (332 bytes security) (deflated 45%) adding: html/LassoPVSolver.html (332 bytes security) (deflated 61%) adding: html/LassoSolver-class.html (332 bytes security) (deflated 41%) adding: html/LassoSolver.html (332 bytes security) (deflated 63%) adding: html/MotifMatcher-class.html (332 bytes security) (deflated 56%) adding: html/parseChromLocString.html (332 bytes security) (deflated 54%) adding: html/parseDatabaseUri.html (332 bytes security) (deflated 53%) adding: html/PearsonSolver-class.html (332 bytes security) (deflated 45%) adding: html/PearsonSolver.html (332 bytes security) (deflated 62%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/RandomForestSolver-class.html (332 bytes security) (deflated 43%) adding: html/RandomForestSolver.html (332 bytes security) (deflated 63%) adding: html/rescalePredictorWeights.html (332 bytes security) (deflated 55%) adding: html/RidgeSolver-class.html (332 bytes security) (deflated 41%) adding: html/RidgeSolver.html (332 bytes security) (deflated 63%) adding: html/run.html (332 bytes security) (deflated 46%) adding: html/show-HumanDHSFilter-method.html (332 bytes security) (deflated 49%) adding: html/show.BayesSpikeSolver.html (332 bytes security) (deflated 48%) adding: html/show.EnsembleSolver.html (332 bytes security) (deflated 48%) adding: html/show.LassoPVSolver.html (332 bytes security) (deflated 47%) adding: html/show.LassoSolver.html (332 bytes security) (deflated 47%) adding: html/show.MotifMatcher.html (332 bytes security) (deflated 47%) adding: html/show.PearsonSolver.html (332 bytes security) (deflated 47%) adding: html/show.RandomForestSolver.html (332 bytes security) (deflated 48%) adding: html/show.RidgeSolver.html (332 bytes security) (deflated 47%) adding: html/show.SpearmanSolver.html (332 bytes security) (deflated 48%) adding: html/show.SqrtLassoSolver.html (332 bytes security) (deflated 48%) adding: html/solve.BayesSpike.html (332 bytes security) (deflated 59%) adding: html/solve.Ensemble.html (332 bytes security) (deflated 59%) adding: html/solve.Lasso.html (332 bytes security) (deflated 58%) adding: html/solve.LassoPV.html (332 bytes security) (deflated 59%) adding: html/solve.Pearson.html (332 bytes security) (deflated 58%) adding: html/solve.RandomForest.html (332 bytes security) (deflated 59%) adding: html/solve.Ridge.html (332 bytes security) (deflated 58%) adding: html/solve.Spearman.html (332 bytes security) (deflated 59%) adding: html/solve.SqrtLasso.html (332 bytes security) (deflated 57%) adding: html/Solver-class.html (332 bytes security) (deflated 60%) adding: html/SpearmanSolver-class.html (332 bytes security) (deflated 45%) adding: html/SpearmanSolver.html (332 bytes security) (deflated 62%) adding: html/SqrtLassoSolver-class.html (332 bytes security) (deflated 45%) adding: html/SqrtLassoSolver.html (332 bytes security) (deflated 62%) adding: html/Trena-class.html (332 bytes security) (deflated 54%) adding: html/TReNA-package.html (332 bytes security) (deflated 63%) adding: html/VarianceFilter-class.html (332 bytes security) (deflated 56%) adding: INDEX (332 bytes security) (deflated 80%) adding: MD5 (332 bytes security) (deflated 53%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: misc/ (372 bytes security) (stored 0%) adding: misc/assessSnp.R (332 bytes security) (stored 0%) adding: misc/createSQLiteDB.R (332 bytes security) (deflated 81%) adding: misc/footprintFinding/ (372 bytes security) (stored 0%) adding: misc/footprintFinding/piq/ (372 bytes security) (stored 0%) adding: misc/footprintFinding/piq/makefile (332 bytes security) (deflated 56%) adding: misc/makeTRN-proximalanddistal-demo.R (332 bytes security) (deflated 63%) adding: misc/makeTRN-proximalonly-demo.R (332 bytes security) (deflated 48%) adding: misc/monteCarloTRN.R (332 bytes security) (deflated 60%) adding: misc/multiModels/ (372 bytes security) (stored 0%) adding: misc/multiModels/aqp4-multi.R (332 bytes security) (deflated 83%) adding: misc/multiModels/aqp4.R (332 bytes security) (deflated 79%) adding: misc/multiModels/graphToJSON-devel.R (332 bytes security) (deflated 71%) adding: misc/multiModels/style.js (332 bytes security) (deflated 77%) adding: misc/profileDbQueries.R (332 bytes security) (deflated 62%) adding: misc/runTReNA-demo.R (332 bytes security) (deflated 58%) adding: NAMESPACE (332 bytes security) (deflated 65%) adding: NEWS (332 bytes security) (stored 0%) adding: notes/ (372 bytes security) (stored 0%) adding: notes/fillEnhancerDatabase.txt (332 bytes security) (deflated 69%) adding: prep/ (372 bytes security) (stored 0%) adding: prep/dream5.yeast/ (372 bytes security) (stored 0%) adding: prep/dream5.yeast/createTestData.R (332 bytes security) (deflated 60%) adding: R/ (372 bytes security) (stored 0%) adding: R/trena (332 bytes security) (deflated 41%) adding: R/trena.rdb (332 bytes security) (deflated 37%) adding: R/trena.rdx (332 bytes security) (deflated 2%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/test_BayesSpikeSolver.R (332 bytes security) (deflated 75%) adding: unitTests/test_CandidateFilter.R (332 bytes security) (deflated 74%) adding: unitTests/test_EnsembleSolver.R (332 bytes security) (deflated 79%) adding: unitTests/test_FootprintFilter.R (332 bytes security) (deflated 78%) adding: unitTests/test_FootprintFinder.R (332 bytes security) (deflated 79%) adding: unitTests/test_GeneOntologyFilter.R (332 bytes security) (deflated 65%) adding: unitTests/test_HumanDHSFilter.R (332 bytes security) (deflated 78%) adding: unitTests/test_LassoPVSolver.R (332 bytes security) (deflated 66%) adding: unitTests/test_LassoSolver.R (332 bytes security) (deflated 76%) adding: unitTests/test_MotifMatcher.R (332 bytes security) (deflated 78%) adding: unitTests/test_PearsonSolver.R (332 bytes security) (deflated 67%) adding: unitTests/test_RandomForestSolver.R (332 bytes security) (deflated 72%) adding: unitTests/test_RidgeSolver.R (332 bytes security) (deflated 82%) adding: unitTests/test_Solver.R (332 bytes security) (deflated 81%) adding: unitTests/test_SpearmanSolver.R (332 bytes security) (deflated 67%) adding: unitTests/test_SqrtLassoSolver.R (332 bytes security) (deflated 78%) adding: unitTests/test_Trena.R (332 bytes security) (deflated 76%) adding: unitTests/test_VarianceFilter.R (332 bytes security) (deflated 66%) adding: utils/ (372 bytes security) (stored 0%) adding: utils/additionalTReNATests.R (332 bytes security) (deflated 77%) adding: utils/createGenomeScaleModel.R (332 bytes security) (deflated 67%) adding: utils/createGlobusTable.R (332 bytes security) (deflated 56%) adding: utils/currentDBs.html (332 bytes security) (deflated 93%) adding: utils/determineSqrtLambda.R (332 bytes security) (deflated 67%) adding: utils/evaluateAllSolvers.R (332 bytes security) (deflated 78%) adding: utils/extraFunctions.R (332 bytes security) (deflated 82%) adding: utils/NaiveSolver.R (332 bytes security) (deflated 72%) adding: utils/runTReNA.R (332 bytes security) (deflated 79%) adding: utils/test_NaiveSolver.R (332 bytes security) (deflated 70%) adding: utils/test_runTReNA.R (332 bytes security) (deflated 78%) adding: utils/test_TReNA.R (332 bytes security) (deflated 72%) adding: utils/TReNA.R (332 bytes security) (deflated 76%)