David Rasp
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/BEclear |
| Branch: RELEASE_3_7 |
| Last Commit: 4ec4f42 |
| Last Changed Date: 2018-09-26 13:32:10 -0400 (Wed, 26 Sep 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:36 -0400 (Wed, 17 Oct 2018).
| Package 110/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BEclear 1.12.1 David Rasp
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BEclear |
| Version: 1.12.1 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BEclear.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings BEclear_1.12.1.tar.gz |
| StartedAt: 2018-10-17 00:40:30 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 00:43:25 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 175.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BEclear.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BEclear.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings BEclear_1.12.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/BEclear.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BEclear/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BEclear' version '1.12.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BEclear' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
BEclear : BEclear: no visible global function definition for 'as'
BEclear : BEclear: no visible global function definition for 'rnorm'
BEclear: no visible global function definition for 'write.table'
calcMedians : calcMedians: no visible global function definition for
'median'
calcPvalues : calcPvals: no visible global function definition for
'ks.test'
calcPvalues: no visible global function definition for 'p.adjust'
makeBoxplot: no visible global function definition for 'par'
makeBoxplot: no visible global function definition for 'boxplot'
makeBoxplot: no visible global function definition for 'mtext'
Undefined global functions or variables:
as boxplot ks.test median mtext p.adjust par rnorm write.table
Consider adding
importFrom("graphics", "boxplot", "mtext", "par")
importFrom("methods", "as")
importFrom("stats", "ks.test", "median", "p.adjust", "rnorm")
importFrom("utils", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
correctBatchEffect 0.29 0.09 15.83
BEclear 0.26 0.06 16.51
makeBoxplot 0.19 0.01 5.89
countValuesToPredict 0.17 0.00 6.17
clearBEgenes 0.07 0.03 5.98
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
correctBatchEffect 0.32 0.11 18.88
BEclear 0.33 0.03 19.53
makeBoxplot 0.19 0.04 6.08
countValuesToPredict 0.16 0.02 6.17
clearBEgenes 0.11 0.04 6.14
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/BEclear.Rcheck/00check.log'
for details.
BEclear.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BEclear_1.12.1.tar.gz && rm -rf BEclear.buildbin-libdir && mkdir BEclear.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BEclear.buildbin-libdir BEclear_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BEclear_1.12.1.zip && rm BEclear_1.12.1.tar.gz BEclear_1.12.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 173k 100 173k 0 0 2855k 0 --:--:-- --:--:-- --:--:-- 3152k
install for i386
* installing *source* package 'BEclear' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BEclear'
finding HTML links ... done
BEclear-package html
BEclear html
finding level-2 HTML links ... done
BEclearData html
calcMedians html
calcPvalues html
calcScore html
calcSummary html
clearBEgenes html
correctBatchEffect html
countValuesToPredict html
ex.corrected.data html
findWrongValues html
makeBoxplot html
replaceWrongValues html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'BEclear' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BEclear' as BEclear_1.12.1.zip
* DONE (BEclear)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'BEclear' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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BEclear.Rcheck/examples_i386/BEclear-Ex.timings
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BEclear.Rcheck/examples_x64/BEclear-Ex.timings
|