Package: HilbertCurve

Version: 1.10.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.10.1.tar.gz

StartedAt: 2018-10-16 21:58:59 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 22:01:27 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 147.8 seconds

RetCode: 0

Status:  OK

CheckDir: HilbertCurve.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.10.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.10.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        17.360  0.648  18.188
hc_layer-GenomicHilbertCurve-method 10.352  0.176  10.576
GenomicHilbertCurve                  9.304  0.111  10.042
hc_png-HilbertCurve-method           5.772  0.217   6.028
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded
* DONE (HilbertCurve)

R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  3.312   0.227   3.515 

name	user	system	elapsed
GenomicHilbertCurve-class	0.002	0.000	0.002
GenomicHilbertCurve	9.304	0.111	10.042
HilbertCurve-class	0.001	0.001	0.002
HilbertCurve	1.042	0.015	1.070
default_overlay	0.001	0.000	0.001
hc_centered_text-HilbertCurve-method	0.138	0.001	0.139
hc_layer-GenomicHilbertCurve-method	10.352	0.176	10.576
hc_layer-HilbertCurve-method	17.360	0.648	18.188
hc_layer-dispatch	0.001	0.000	0.001
hc_level-HilbertCurve-method	0.035	0.002	0.039
hc_map-GenomicHilbertCurve-method	2.650	0.019	2.697
hc_normal_points-HilbertCurve-method	0.001	0.000	0.001
hc_offset-HilbertCurve-method	0.026	0.001	0.029
hc_png-HilbertCurve-method	5.772	0.217	6.028
hc_points-GenomicHilbertCurve-method	0.339	0.002	0.345
hc_points-HilbertCurve-method	0.564	0.012	0.579
hc_points-dispatch	0.002	0.001	0.002
hc_polygon-GenomicHilbertCurve-method	0.433	0.004	0.440
hc_polygon-HilbertCurve-method	0.051	0.001	0.053
hc_polygon-dispatch	0.001	0.000	0.001
hc_rect-GenomicHilbertCurve-method	0.248	0.001	0.251
hc_rect-HilbertCurve-method	0.039	0.001	0.040
hc_rect-dispatch	0.001	0.001	0.001
hc_segmented_points-HilbertCurve-method	0.001	0.000	0.001
hc_segments-GenomicHilbertCurve-method	0.574	0.002	0.580
hc_segments-HilbertCurve-method	0.065	0.001	0.065
hc_segments-dispatch	0.001	0.000	0.001
hc_text-GenomicHilbertCurve-method	0.111	0.002	0.112
hc_text-HilbertCurve-method	0.095	0.001	0.099
hc_text-dispatch	0.001	0.000	0.002
show-HilbertCurve-method	0.011	0.001	0.011
unzoom-HilbertCurve-method	0.021	0.000	0.021
zoom-HilbertCurve-method	0.008	0.001	0.008