Renan Sauteraud
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/Pviz |
| Branch: RELEASE_3_7 |
| Last Commit: 680e010 |
| Last Changed Date: 2018-04-30 10:35:33 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:53:12 -0400 (Wed, 17 Oct 2018).
| Package 1152/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Pviz 1.14.0 Renan Sauteraud
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: Pviz |
| Version: 1.14.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pviz.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pviz_1.14.0.tar.gz |
| StartedAt: 2018-10-16 23:24:59 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 23:29:37 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 278.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Pviz.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Pviz.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Pviz_1.14.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/Pviz.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Pviz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Pviz’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Pviz’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.makeParMapping: no visible global function definition for
'assignInNamespace'
drawGD,ProbeTrack: no visible global function definition for
'pushViewport'
drawGD,ProbeTrack: no visible global function definition for 'viewport'
drawGD,ProbeTrack: no visible global function definition for
'popViewport'
drawGD,ProbeTrack: no visible global function definition for 'unit'
drawGD,ProbeTrack: no visible global function definition for 'gpar'
drawGD,ProbeTrack: no visible global function definition for
'convertWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringHeight'
drawGD,ProbeTrack: no visible global function definition for
'grid.text'
drawGD,ProbeTrack: no visible global function definition for
'grid.rect'
drawGD,ProbeTrack: no visible global function definition for
'dataViewport'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.rect'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'gpar'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'popViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'.getGapPos'
drawGD,ProteinAxisTrack: no visible global function definition for
'gaps'
drawGD,ProteinAxisTrack: no visible global function definition for
'viewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.segments'
drawGD,ProteinAxisTrack: no visible global function definition for
'gpar'
drawGD,ProteinAxisTrack: no visible global function definition for
'coord2ext'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertWidth'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'gpar'
drawGD,ProteinSequenceTrack: no visible global function definition for
'popViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'convertUnit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.lines'
drawGD,ProteinSequenceTrack: no visible global function definition for
'unit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.text'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.rect'
Undefined global functions or variables:
.getGapPos assignInNamespace convertHeight convertUnit convertWidth
coord2ext dataViewport gaps gpar grid.lines grid.rect grid.segments
grid.text popViewport pushViewport stringHeight stringWidth unit
viewport
Consider adding
importFrom("utils", "assignInNamespace")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ProbeTrack 5.011 0.077 5.115
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.7-bioc/meat/Pviz.Rcheck/00check.log’
for details.
Pviz.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Pviz ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘Pviz’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'Pviz.Rnw' ** testing if installed package can be loaded * DONE (Pviz)
Pviz.Rcheck/Pviz-Ex.timings
| name | user | system | elapsed | |
| ATrack | 3.495 | 0.123 | 3.649 | |
| CladeTrack | 1.193 | 0.059 | 1.257 | |
| DTrack | 0.130 | 0.002 | 0.131 | |
| ProbeTrack | 5.011 | 0.077 | 5.115 | |
| ProteinAxisTrack | 0.657 | 0.006 | 0.665 | |
| ProteinSequenceTrack | 0.316 | 0.006 | 0.324 | |
| plot_clade | 1.751 | 0.031 | 1.799 | |
| plot_inter | 0.938 | 0.021 | 0.812 | |