Robin Andersson
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/SMAP |
| Branch: RELEASE_3_7 |
| Last Commit: 3219eed |
| Last Changed Date: 2018-04-30 10:35:07 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:33:30 -0400 (Wed, 17 Oct 2018).
| Package 1390/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SMAP 1.44.0 Robin Andersson
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SMAP |
| Version: 1.44.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SMAP_1.44.0.tar.gz && rm -rf SMAP.buildbin-libdir && mkdir SMAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMAP.buildbin-libdir SMAP_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SMAP_1.44.0.zip && rm SMAP_1.44.0.tar.gz SMAP_1.44.0.zip |
| StartedAt: 2018-10-16 18:35:37 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:36:08 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 30.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SMAP_1.44.0.tar.gz && rm -rf SMAP.buildbin-libdir && mkdir SMAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMAP.buildbin-libdir SMAP_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SMAP_1.44.0.zip && rm SMAP_1.44.0.tar.gz SMAP_1.44.0.zip
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install for i386
* installing *source* package 'SMAP' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c gradient.c -o gradient.o
gradient.c: In function 'prior_gradient':
gradient.c:142:7: warning: variable 'lower' set but not used [-Wunused-but-set-variable]
int lower;
^
gradient.c: In function 'hmm_update':
gradient.c:247:10: warning: unused variable 'tmp' [-Wunused-variable]
double tmp;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c overlap.c -o overlap.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c prob.c -o prob.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c viterbi.c -o viterbi.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SMAP.dll tmp.def gradient.o init.o overlap.o prob.o viterbi.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/SMAP.buildbin-libdir/SMAP/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SMAP'
finding HTML links ... done
GBM html
SMAP-internal html
SMAPHMM-class html
SMAPHMM html
SMAPObservations-class html
SMAPObservations html
SMAPProfile-class html
SMAPProfiles-class html
smap html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'SMAP' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c gradient.c -o gradient.o
gradient.c: In function 'prior_gradient':
gradient.c:142:7: warning: variable 'lower' set but not used [-Wunused-but-set-variable]
int lower;
^
gradient.c: In function 'hmm_update':
gradient.c:247:10: warning: unused variable 'tmp' [-Wunused-variable]
double tmp;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c overlap.c -o overlap.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c prob.c -o prob.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c viterbi.c -o viterbi.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SMAP.dll tmp.def gradient.o init.o overlap.o prob.o viterbi.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/SMAP.buildbin-libdir/SMAP/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SMAP' as SMAP_1.44.0.zip
* DONE (SMAP)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'SMAP' successfully unpacked and MD5 sums checked
In R CMD INSTALL