Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:39:55 -0400 (Wed, 17 Oct 2018).
Package 338/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
cytofkit 1.12.0 Jinmiao Chen
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: cytofkit |
Version: 1.12.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/cytofkit_1.12.0.tar.gz && rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cytofkit.buildbin-libdir cytofkit_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL cytofkit_1.12.0.zip && rm cytofkit_1.12.0.tar.gz cytofkit_1.12.0.zip |
StartedAt: 2018-10-16 20:19:39 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 20:21:31 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 112.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/cytofkit_1.12.0.tar.gz && rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cytofkit.buildbin-libdir cytofkit_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL cytofkit_1.12.0.zip && rm cytofkit_1.12.0.tar.gz cytofkit_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3722k 100 3722k 0 0 35.4M 0 --:--:-- --:--:-- --:--:-- 37.8M install for i386 * installing *source* package 'cytofkit' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c jaccard_coeff.cpp -o jaccard_coeff.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o cytofkit.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/cytofkit.buildbin-libdir/cytofkit/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cytofkit' finding HTML links ... done ClusterX html DensVM html Rphenograph html cytof_addToFCS html cytof_cluster html cytof_clusterMtrx html cytof_clusterPlot html cytof_clusterStat html cytof_colorPlot html cytof_dimReduction html finding level-2 HTML links ... done cytof_exprsExtract html cytof_exprsMerge html cytof_heatmap html cytof_progression html cytof_progressionPlot html cytof_writeResults html cytofkit-package html cytofkit html cytofkitNews html cytofkitShinyAPP html cytofkit_GUI html fixedLogicleParameters_GUI html getParameters_GUI html launchShinyAPP_GUI html spectral1 html spectral2 html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'cytofkit' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c jaccard_coeff.cpp -o jaccard_coeff.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o cytofkit.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/cytofkit.buildbin-libdir/cytofkit/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'cytofkit' as cytofkit_1.12.0.zip * DONE (cytofkit) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'cytofkit' successfully unpacked and MD5 sums checked In R CMD INSTALL