Package: sampleClassifier

Version: 1.8.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:sampleClassifier.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings sampleClassifier_1.8.0.tar.gz

StartedAt: 2019-10-16 04:47:06 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 04:51:47 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 280.4 seconds

RetCode: 0

Status:  OK

CheckDir: sampleClassifier.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:sampleClassifier.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings sampleClassifier_1.8.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/sampleClassifier.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sampleClassifier/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sampleClassifier’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sampleClassifier’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                             user system elapsed
classifyProfile.rnaseq     79.821  0.263  80.854
classifyProfile            32.852  0.514  34.347
get.heatmap                28.248  0.064  28.613
classifyProfile.svm        25.756  0.052  25.968
classifyProfile.rnaseq.svm 14.686  0.040  14.795
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL sampleClassifier
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘sampleClassifier’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sampleClassifier)

name	user	system	elapsed
classifyProfile	32.852	0.514	34.347
classifyProfile.rnaseq	79.821	0.263	80.854
classifyProfile.rnaseq.svm	14.686	0.040	14.795
classifyProfile.svm	25.756	0.052	25.968
get.heatmap	28.248	0.064	28.613
sampleClassifier-package	0	0	0