| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-20 12:03 -0400 (Sat, 20 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4814 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4603 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4547 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 314/2333 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CEMiTool 1.33.0 (landing page) Helder Nakaya
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the CEMiTool package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CEMiTool.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CEMiTool |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CEMiTool |
| StartedAt: 2025-09-19 16:40:00 -0400 (Fri, 19 Sep 2025) |
| EndedAt: 2025-09-19 16:40:50 -0400 (Fri, 19 Sep 2025) |
| EllapsedTime: 50.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CEMiTool
###
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* checking for file ‘CEMiTool/DESCRIPTION’ ... OK
* preparing ‘CEMiTool’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CEMiTool.Rmd’ using rmarkdown
Quitting from CEMiTool.Rmd:43-45 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! c("assignment of an object of class \"ggplot2::ggplot\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE", "assignment of an object of class \"ggplot\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE", "assignment of an object of class \"ggplot2::gg\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE", "assignment of an object of class \"S7_object\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE",
"assignment of an object of class \"gg\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE")
---
Backtrace:
▆
1. └─CEMiTool::cemitool(expr0)
2. ├─CEMiTool::plot_mean_var(results)
3. └─CEMiTool::plot_mean_var(results)
4. └─CEMiTool (local) .local(cem, ...)
5. └─methods (local) `<fn>`(`<chr>`, "mean_var_plot", `<chr>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CEMiTool.Rmd' failed with diagnostics:
c("assignment of an object of class \"ggplot2::ggplot\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE", "assignment of an object of class \"ggplot\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE", "assignment of an object of class \"ggplot2::gg\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE", "assignment of an object of class \"S7_object\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE",
"assignment of an object of class \"gg\" is not valid for @'mean_var_plot' in an object of class \"CEMiTool\"; is(value, \"gg\") is not TRUE")
--- failed re-building ‘CEMiTool.Rmd’
SUMMARY: processing the following file failed:
‘CEMiTool.Rmd’
Error: Vignette re-building failed.
Execution halted