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This page was generated on 2025-10-29 12:05 -0400 (Wed, 29 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4901
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4691
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 794/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GBScleanR 2.3.2  (landing page)
Tomoyuki Furuta
Snapshot Date: 2025-10-28 13:45 -0400 (Tue, 28 Oct 2025)
git_url: https://git.bioconductor.org/packages/GBScleanR
git_branch: devel
git_last_commit: d1bad5d
git_last_commit_date: 2025-06-17 21:55:38 -0400 (Tue, 17 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for GBScleanR on nebbiolo2

To the developers/maintainers of the GBScleanR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GBScleanR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GBScleanR
Version: 2.3.2
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 GBScleanR
StartedAt: 2025-10-28 17:42:23 -0400 (Tue, 28 Oct 2025)
EndedAt: 2025-10-28 17:43:15 -0400 (Tue, 28 Oct 2025)
EllapsedTime: 52.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 GBScleanR
###
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* checking for file ‘GBScleanR/DESCRIPTION’ ... OK
* preparing ‘GBScleanR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BasicUsageOfGBScleanR.rmd’ using rmarkdown

Quitting from BasicUsageOfGBScleanR.rmd:107-109 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `seqOptimize()`:
! unused argument (gdsfn = gds$filename)
---
Backtrace:
    ▆
 1. └─GBScleanR::loadGDS(gds_fn, verbose = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BasicUsageOfGBScleanR.rmd' failed with diagnostics:
unused argument (gdsfn = gds$filename)
--- failed re-building ‘BasicUsageOfGBScleanR.rmd’

SUMMARY: processing the following file failed:
  ‘BasicUsageOfGBScleanR.rmd’

Error: Vignette re-building failed.
Execution halted