Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-08 12:10 -0400 (Fri, 08 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4815 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4550 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4592 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4534 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1735/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RESOLVE 1.11.1 (landing page) Luca De Sano
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the RESOLVE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RESOLVE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RESOLVE |
Version: 1.11.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.11.1.tar.gz |
StartedAt: 2025-08-07 21:09:55 -0400 (Thu, 07 Aug 2025) |
EndedAt: 2025-08-07 21:16:02 -0400 (Thu, 07 Aug 2025) |
EllapsedTime: 366.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RESOLVE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.11.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/RESOLVE.Rcheck’ * using R version 4.5.1 Patched (2025-06-14 r88325) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.6) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RESOLVE/DESCRIPTION’ ... OK * this is package ‘RESOLVE’ version ‘1.11.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RESOLVE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed signaturesSignificance 59.980 0.054 60.107 signaturesCV 47.410 0.105 48.717 signaturesDecomposition 34.250 0.040 34.305 signaturesAssignment 17.909 0.024 17.935 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RESOLVE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RESOLVE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘RESOLVE’ ... ** this is package ‘RESOLVE’ version ‘1.11.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RESOLVE)
RESOLVE.Rcheck/tests/testthat.Rout
R version 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > > library("testthat") > library("RESOLVE") > > test_check("RESOLVE") [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] > > proc.time() user system elapsed 88.425 0.440 89.110
RESOLVE.Rcheck/RESOLVE-Ex.timings
name | user | system | elapsed | |
associationAlterations | 0.233 | 0.012 | 0.245 | |
associationPrognosis | 0.068 | 0.002 | 0.070 | |
associationSignatures | 0.419 | 0.010 | 0.428 | |
getCNCounts | 0.004 | 0.001 | 0.004 | |
getIDCounts | 1.667 | 0.101 | 1.793 | |
getMNVCounts | 4.210 | 0.016 | 4.258 | |
getSBSCounts | 0.362 | 0.076 | 0.443 | |
groupsCNPlot | 0.79 | 0.01 | 0.80 | |
groupsCXPlot | 0.500 | 0.009 | 0.508 | |
groupsIDPlot | 1.183 | 0.012 | 1.201 | |
groupsMNVPlot | 1.082 | 0.061 | 1.150 | |
groupsSBSPlot | 0.986 | 0.021 | 1.008 | |
patientsCNPlot | 0.370 | 0.002 | 0.372 | |
patientsCXPlot | 0.180 | 0.002 | 0.182 | |
patientsIDPlot | 0.560 | 0.002 | 0.562 | |
patientsMNVPlot | 0.370 | 0.002 | 0.372 | |
patientsSBSPlot | 0.251 | 0.002 | 0.252 | |
signaturesAssignment | 17.909 | 0.024 | 17.935 | |
signaturesCNPlot | 0.526 | 0.022 | 0.548 | |
signaturesCV | 47.410 | 0.105 | 48.717 | |
signaturesCXPlot | 0.257 | 0.012 | 0.269 | |
signaturesClustering | 3.842 | 0.057 | 3.901 | |
signaturesDecomposition | 34.250 | 0.040 | 34.305 | |
signaturesIDPlot | 0.802 | 0.020 | 0.821 | |
signaturesMNVPlot | 0.503 | 0.003 | 0.505 | |
signaturesSBSPlot | 0.346 | 0.002 | 0.347 | |
signaturesSignificance | 59.980 | 0.054 | 60.107 | |