Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-28 12:04 -0400 (Thu, 28 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4822 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4613 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4556 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4539 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1945/2319 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SeqArray 1.49.4 (landing page) Xiuwen Zheng
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | TIMEOUT | skipped | ||||||||||
To the developers/maintainers of the SeqArray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqArray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SeqArray |
Version: 1.49.4 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SeqArray |
StartedAt: 2025-08-27 19:41:42 -0400 (Wed, 27 Aug 2025) |
EndedAt: 2025-08-27 19:43:29 -0400 (Wed, 27 Aug 2025) |
EllapsedTime: 107.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SeqArray ### ############################################################################## ############################################################################## * checking for file ‘SeqArray/DESCRIPTION’ ... OK * preparing ‘SeqArray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘OverviewSlides.Rmd’ using rmarkdown --- finished re-building ‘OverviewSlides.Rmd’ --- re-building ‘SeqArray.Rmd’ using rmarkdown Quitting from SeqArray.Rmd:293-299 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `renameSeqlevels()`: ! could not find function "renameSeqlevels" --- Backtrace: ▆ 1. └─SeqArray::seqAsVCF(file, chr.prefix = "chr") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SeqArray.Rmd' failed with diagnostics: could not find function "renameSeqlevels" --- failed re-building ‘SeqArray.Rmd’ --- re-building ‘SeqArrayTutorial.Rmd’ using rmarkdown --- finished re-building ‘SeqArrayTutorial.Rmd’ SUMMARY: processing the following file failed: ‘SeqArray.Rmd’ Error: Vignette re-building failed. Execution halted