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This page was generated on 2025-08-28 12:04 -0400 (Thu, 28 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4822
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4613
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4556
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4539
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1945/2319HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.49.4  (landing page)
Xiuwen Zheng
Snapshot Date: 2025-08-27 13:45 -0400 (Wed, 27 Aug 2025)
git_url: https://git.bioconductor.org/packages/SeqArray
git_branch: devel
git_last_commit: 4cc25c2
git_last_commit_date: 2025-08-27 00:27:11 -0400 (Wed, 27 Aug 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    TIMEOUT  skipped


BUILD results for SeqArray on nebbiolo2

To the developers/maintainers of the SeqArray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqArray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SeqArray
Version: 1.49.4
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SeqArray
StartedAt: 2025-08-27 19:41:42 -0400 (Wed, 27 Aug 2025)
EndedAt: 2025-08-27 19:43:29 -0400 (Wed, 27 Aug 2025)
EllapsedTime: 107.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SeqArray
###
##############################################################################
##############################################################################


* checking for file ‘SeqArray/DESCRIPTION’ ... OK
* preparing ‘SeqArray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘OverviewSlides.Rmd’ using rmarkdown
--- finished re-building ‘OverviewSlides.Rmd’

--- re-building ‘SeqArray.Rmd’ using rmarkdown

Quitting from SeqArray.Rmd:293-299 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `renameSeqlevels()`:
! could not find function "renameSeqlevels"
---
Backtrace:
    ▆
 1. └─SeqArray::seqAsVCF(file, chr.prefix = "chr")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SeqArray.Rmd' failed with diagnostics:
could not find function "renameSeqlevels"
--- failed re-building ‘SeqArray.Rmd’

--- re-building ‘SeqArrayTutorial.Rmd’ using rmarkdown
--- finished re-building ‘SeqArrayTutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘SeqArray.Rmd’

Error: Vignette re-building failed.
Execution halted