Jiefei Wang
| Snapshot Date: 2026-03-08 13:40 -0400 (Sun, 08 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/SharedObject |
| git_branch: devel |
| git_last_commit: 1ded86d |
| git_last_commit_date: 2025-10-29 10:54:16 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:33 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1996/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SharedObject 1.25.0 (landing page) Jiefei Wang
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| See other builds for SharedObject in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SharedObject package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SharedObject.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SharedObject |
| Version: 1.25.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SharedObject |
| StartedAt: 2026-03-08 20:04:08 -0400 (Sun, 08 Mar 2026) |
| EndedAt: 2026-03-08 20:04:12 -0400 (Sun, 08 Mar 2026) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SharedObject
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* checking for file ‘SharedObject/DESCRIPTION’ ... OK
* preparing ‘SharedObject’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
-----------------------------------
Warning: SystemRequirements specified C++11: support has been removed
* installing *source* package ‘SharedObject’ ...
** this is package ‘SharedObject’ version ‘1.25.0’
** using staged installation
checking for gcc... gcc -std=gnu2x
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu2x accepts -g... yes
checking for gcc -std=gnu2x option to accept ISO C89... none needed
checking for shm_open in -lrt... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
specified C++11
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c C_interface.cpp -o C_interface.o
C_interface.cpp: In function ‘int C_getObject(SEXP)’:
C_interface.cpp:166:16: error: ‘OBJECT’ was not declared in this scope
166 | return OBJECT(x);
| ^~~~~~
C_interface.cpp: In function ‘bool C_ISS4(SEXP)’:
C_interface.cpp:176:16: error: ‘IS_S4_OBJECT’ was not declared in this scope; did you mean ‘SET_OBJECT’?
176 | return IS_S4_OBJECT(x);
| ^~~~~~~~~~~~
| SET_OBJECT
C_interface.cpp: In function ‘void C_SETS4(SEXP)’:
C_interface.cpp:181:9: error: ‘SET_S4_OBJECT’ was not declared in this scope; did you mean ‘SET_OBJECT’?
181 | SET_S4_OBJECT(x);
| ^~~~~~~~~~~~~
| SET_OBJECT
C_interface.cpp: In function ‘void C_UNSETS4(SEXP)’:
C_interface.cpp:186:9: error: ‘UNSET_S4_OBJECT’ was not declared in this scope; did you mean ‘SET_OBJECT’?
186 | UNSET_S4_OBJECT(x);
| ^~~~~~~~~~~~~~~
| SET_OBJECT
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:197: C_interface.o] Error 1
ERROR: compilation failed for package ‘SharedObject’
* removing ‘/tmp/RtmpYQ9XaR/Rinst1b7b631c25ba34/SharedObject’
-----------------------------------
ERROR: package installation failed