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This page was generated on 2025-06-24 12:05 -0400 (Tue, 24 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4565
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4506
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4544
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4492
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4497
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2017/2310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.45.0  (landing page)
Julian Gehring
Snapshot Date: 2025-06-23 13:25 -0400 (Mon, 23 Jun 2025)
git_url: https://git.bioconductor.org/packages/SomaticSignatures
git_branch: devel
git_last_commit: 270d0d0
git_last_commit_date: 2025-04-15 10:28:39 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for SomaticSignatures on nebbiolo2

To the developers/maintainers of the SomaticSignatures package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SomaticSignatures.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SomaticSignatures
Version: 2.45.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SomaticSignatures
StartedAt: 2025-06-23 20:00:08 -0400 (Mon, 23 Jun 2025)
EndedAt: 2025-06-23 20:01:25 -0400 (Mon, 23 Jun 2025)
EllapsedTime: 77.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SomaticSignatures
###
##############################################################################
##############################################################################


* checking for file ‘SomaticSignatures/DESCRIPTION’ ... OK
* preparing ‘SomaticSignatures’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SomaticSignatures-vignette.Rhtml’ using knitr

Quitting from SomaticSignatures-vignette.Rhtml:370-387 [sca_to_vranges]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `keepSeqlevels()`:
! could not find function "keepSeqlevels"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SomaticSignatures-vignette.Rhtml' failed with diagnostics:
could not find function "keepSeqlevels"
--- failed re-building ‘SomaticSignatures-vignette.Rhtml’

SUMMARY: processing the following file failed:
  ‘SomaticSignatures-vignette.Rhtml’

Error: Vignette re-building failed.
Execution halted