Luca De Sano
| Snapshot Date: 2025-07-20 13:25 -0400 (Sun, 20 Jul 2025) |
| git_url: https://git.bioconductor.org/packages/SparseSignatures |
| git_branch: devel |
| git_last_commit: b0556fa |
| git_last_commit_date: 2025-04-15 11:20:42 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-07-21 12:13 -0400 (Mon, 21 Jul 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4791 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4529 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4572 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4513 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4510 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2029/2311 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SparseSignatures 2.19.0 (landing page) Luca De Sano
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the SparseSignatures package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SparseSignatures.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SparseSignatures |
| Version: 2.19.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SparseSignatures |
| StartedAt: 2025-07-18 03:17:23 -0000 (Fri, 18 Jul 2025) |
| EndedAt: 2025-07-18 03:18:28 -0000 (Fri, 18 Jul 2025) |
| EllapsedTime: 65.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SparseSignatures
###
##############################################################################
##############################################################################
* checking for file ‘SparseSignatures/DESCRIPTION’ ... OK
* preparing ‘SparseSignatures’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘v1_introduction.rmd’ using rmarkdown
--- finished re-building ‘v1_introduction.rmd’
--- re-building ‘v2_using_the_package.rmd’ using rmarkdown
Quitting from v2_using_the_package.rmd:43-48 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'BSgenome.Hsapiens.1000genomes.hs37d5'
---
Backtrace:
▆
1. └─base::library("BSgenome.Hsapiens.1000genomes.hs37d5")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'v2_using_the_package.rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.1000genomes.hs37d5'
--- failed re-building ‘v2_using_the_package.rmd’
SUMMARY: processing the following file failed:
‘v2_using_the_package.rmd’
Error: Vignette re-building failed.
Execution halted