Johannes Rainer
| Snapshot Date: 2025-11-19 13:40 -0500 (Wed, 19 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/SpectriPy |
| git_branch: devel |
| git_last_commit: 09e5773 |
| git_last_commit_date: 2025-10-29 11:36:52 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-20 11:39 -0500 (Thu, 20 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4827 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4600 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4564 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2062/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SpectriPy 1.1.0 (landing page) Johannes Rainer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the SpectriPy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SpectriPy |
| Version: 1.1.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SpectriPy_1.1.0.tar.gz |
| StartedAt: 2025-11-20 00:23:33 -0500 (Thu, 20 Nov 2025) |
| EndedAt: 2025-11-20 00:30:16 -0500 (Thu, 20 Nov 2025) |
| EllapsedTime: 402.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SpectriPy.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SpectriPy_1.1.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/SpectriPy.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SpectriPy/DESCRIPTION’ ... OK
* this is package ‘SpectriPy’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpectriPy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘Spectra:::.check_peaks_data_value’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
MsBackendPy 6.042 0.761 6.682
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/SpectriPy.Rcheck/00check.log’
for details.
SpectriPy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SpectriPy ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’ * installing *source* package ‘SpectriPy’ ... ** this is package ‘SpectriPy’ version ‘1.1.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpectriPy)
SpectriPy.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Spectra)
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: 'generics'
The following objects are masked from 'package:base':
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: BiocParallel
> library(SpectriPy)
Loading required package: reticulate
> library(MsBackendMgf)
>
> fl <- system.file("extdata", "mgf", "test.mgf", package = "SpectriPy")
> s <- Spectra(fl, source = MsBackendMgf())
Start data import from 1 files ... done
> s <- setBackend(s, MsBackendPy(), pythonVariableName = "py_be")
>
> be <- s@backend
>
> test_check("SpectriPy")
2025-11-20 00:29:51,688:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,690:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,691:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,692:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,693:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,694:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,695:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,696:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,697:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,698:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,699:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,699:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,700:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,701:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,702:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,703:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,704:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,705:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,706:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,707:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,707:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,708:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,709:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,710:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,711:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,711:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,712:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,713:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,714:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,714:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,715:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,716:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,716:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,717:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,718:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,718:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,719:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,720:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,721:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,722:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,722:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,723:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,724:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,724:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,728:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,729:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,730:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,731:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,731:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,732:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,733:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,734:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,735:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,735:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,736:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,737:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,737:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,738:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,739:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,740:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,740:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,741:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,742:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,743:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,743:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,744:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,745:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,746:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,747:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,748:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,749:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,749:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,750:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,751:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,752:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,753:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,754:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,755:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,756:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,757:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,757:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,758:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,759:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,760:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,760:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,761:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,762:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,763:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,763:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,764:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,765:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,765:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,766:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,767:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,767:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,768:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,769:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,769:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,770:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:29:51,771:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 25%|██▌ | 1/4 [00:02<00:08, 2.88s/it]
Calculating similarities: 100%|██████████| 4/4 [00:02<00:00, 1.39it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 4123.18it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 2253.49it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 3672.77it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 5953.59it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 4046.60it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 4240.95it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2567.68it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2145.42it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3449.26it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 2/4 [00:00<00:00, 2014.07it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 1/2 [00:00<00:00, 1.33it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2.66it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 1/2 [00:01<00:01, 1.01s/it]
Calculating similarities: 100%|██████████| 2/2 [00:01<00:00, 1.97it/s]
2025-11-20 00:30:05,311:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,392:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,392:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,393:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,485:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,486:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,487:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,801:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,803:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,804:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,853:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,854:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:05,855:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:06,257:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:06,258:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:06,259:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:06,289:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:06,290:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-20 00:30:06,291:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2545.09it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3000.22it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2455.32it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3703.58it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2638.76it/s]
[ FAIL 0 | WARN 4 | SKIP 1 | PASS 592 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test_zzz.R:16:1'
[ FAIL 0 | WARN 4 | SKIP 1 | PASS 592 ]
>
> ## TODO: add tests from the Spectra unit test suite!
>
> ## ## Run the MsBackend spectra variable test suite
> ## test_suite <- system.file("test_backends", "test_MsBackend",
> ## package = "Spectra")
>
> ## ## Run single test file.
> ## res <- test_dir(test_suite, stop_on_failure = TRUE)
>
> proc.time()
user system elapsed
36.052 4.011 39.651
/Users/biocbuild/Library/Caches/org.R-project.R/R/reticulate/uv/python/cpython-3.12.12-macos-x86_64-none/lib/python3.12/multiprocessing/resource_tracker.py:279: UserWarning: resource_tracker: There appear to be 1 leaked semaphore objects to clean up at shutdown
warnings.warn('resource_tracker: There appear to be %d '
SpectriPy.Rcheck/SpectriPy-Ex.timings
| name | user | system | elapsed | |
| MsBackendPy | 6.042 | 0.761 | 6.682 | |
| compareSpectriPy | 2.886 | 0.309 | 3.220 | |
| conversion | 0.483 | 0.261 | 0.598 | |
| filterSpectriPy | 0.272 | 0.036 | 0.311 | |