Multiple platform build/check report for BioC 3.22 - BUILD results for bayNorm on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4796
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4536
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4578
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4519
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4517
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for bayNorm on lconway

To the developers/maintainers of the bayNorm package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bayNorm.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: bayNorm

Version: 1.27.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bayNorm

StartedAt: 2025-08-03 16:12:36 -0400 (Sun, 03 Aug 2025)

EndedAt: 2025-08-03 16:13:36 -0400 (Sun, 03 Aug 2025)

EllapsedTime: 59.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bayNorm
###
##############################################################################
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* checking for file ‘bayNorm/DESCRIPTION’ ... OK
* preparing ‘bayNorm’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bayNorm.Rmd’ using rmarkdown

Quitting from bayNorm.Rmd:110-126 [intro_bayNorm]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `socketConnection()`:
! cannot open the connection
---
Backtrace:
    ▆
 1. └─bayNorm::bayNorm(...)
 2.   └─bayNorm::Prior_fun(...)
 3.     └─bayNorm::BB_Fun(...)
 4.       └─parallel::makeCluster(NCores, type = "SOCK")
 5.         └─snow::makeSOCKcluster(names = spec, ...)
 6.           └─snow::newSOCKnode(names[[i]], options = options, rank = i)
 7.             └─base::socketConnection(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'bayNorm.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘bayNorm.Rmd’

SUMMARY: processing the following file failed:
  ‘bayNorm.Rmd’

Error: Vignette re-building failed.
Execution halted