| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-07 11:32 -0500 (Fri, 07 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4818 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 181/2323 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bioCancer 1.39.0 (landing page) Karim Mezhoud
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
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To the developers/maintainers of the bioCancer package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bioCancer.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bioCancer |
| Version: 1.39.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bioCancer |
| StartedAt: 2025-11-06 16:26:01 -0500 (Thu, 06 Nov 2025) |
| EndedAt: 2025-11-06 16:26:17 -0500 (Thu, 06 Nov 2025) |
| EllapsedTime: 16.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bioCancer
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* checking for file ‘bioCancer/DESCRIPTION’ ... OK
* preparing ‘bioCancer’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
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* installing *source* package ‘bioCancer’ ...
** this is package ‘bioCancer’ version ‘1.39.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘cBioPortalData’:
object ‘microRNAs’ is not exported by 'namespace:GenomicFeatures'
Execution halted
ERROR: lazy loading failed for package ‘bioCancer’
* removing ‘/tmp/RtmpshQtc3/Rinst8c74f7e19cc47/bioCancer’
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ERROR: package installation failed