Back to Multiple platform build/check report for BioC 3.22:   simplified   long
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This page was generated on 2025-08-11 12:07 -0400 (Mon, 11 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4532
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 470/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
crumblr 1.1.0  (landing page)
Gabriel Hoffman
Snapshot Date: 2025-08-10 13:45 -0400 (Sun, 10 Aug 2025)
git_url: https://git.bioconductor.org/packages/crumblr
git_branch: devel
git_last_commit: 515361e
git_last_commit_date: 2025-04-15 13:49:52 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for crumblr on palomino8

To the developers/maintainers of the crumblr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crumblr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: crumblr
Version: 1.1.0
Command: chmod a+r crumblr -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data crumblr
StartedAt: 2025-08-10 18:15:35 -0400 (Sun, 10 Aug 2025)
EndedAt: 2025-08-10 18:17:37 -0400 (Sun, 10 Aug 2025)
EllapsedTime: 122.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r crumblr -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data crumblr
###
##############################################################################
##############################################################################


* checking for file 'crumblr/DESCRIPTION' ... OK
* preparing 'crumblr':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'crumblr.Rmd' using rmarkdown
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.

Quitting from crumblr.Rmd:137-147 [dream]
Error: processing vignette 'crumblr.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building 'crumblr.Rmd'

--- re-building 'crumblr_theory.Rmd' using rmarkdown

Quitting from crumblr_theory.Rmd:152-164 [sim1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `mclapply()`:
! 'mc.cores' > 1 is not supported on Windows
---
Backtrace:
    ▆
 1. └─global run_sim()
 2.   └─base::lapply(...)
 3.     └─FUN(X[[i]], ...)
 4.       └─parallel::mclapply(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'crumblr_theory.Rmd' failed with diagnostics:
'mc.cores' > 1 is not supported on Windows
--- failed re-building 'crumblr_theory.Rmd'

--- re-building 'integration.Rmd' using rmarkdown

Quitting from integration.Rmd:108-115 [vp]
Error: processing vignette 'integration.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building 'integration.Rmd'

SUMMARY: processing the following files failed:
  'crumblr.Rmd' 'crumblr_theory.Rmd' 'integration.Rmd'

Error: Vignette re-building failed.
Execution halted