| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-10-23 12:03 -0400 (Thu, 23 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4894 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4684 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4629 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4642 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 497/2355 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.17.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cyanoFilter |
| Version: 1.17.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings cyanoFilter_1.17.0.tar.gz |
| StartedAt: 2025-10-22 22:48:48 -0400 (Wed, 22 Oct 2025) |
| EndedAt: 2025-10-22 22:51:35 -0400 (Wed, 22 Oct 2025) |
| EllapsedTime: 167.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings cyanoFilter_1.17.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gateFunc 8.182 0.298 6.748
ggpairsDens 4.886 0.332 5.228
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.17.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 0.644 | 0.021 | 0.667 | |
| PhytoFilter | 0.684 | 0.043 | 0.729 | |
| PhytopFilter | 0.505 | 0.020 | 0.526 | |
| accTest | 0.319 | 0.006 | 0.326 | |
| accuracy | 0.329 | 0.000 | 0.329 | |
| cellmargin | 0.256 | 0.007 | 0.264 | |
| clusterExtract | 0.701 | 0.162 | 0.864 | |
| clusterExtractp | 0.969 | 0.125 | 1.093 | |
| debrisNc | 0.266 | 0.080 | 0.346 | |
| fullFlowframe-MarginEvents-method | 0.249 | 0.003 | 0.252 | |
| fullFlowframe-PhytopFilter-method | 0.515 | 0.024 | 0.539 | |
| fullFlowframe | 0.261 | 0.006 | 0.268 | |
| gateFunc | 8.182 | 0.298 | 6.748 | |
| ggpairsDens | 4.886 | 0.332 | 5.228 | |
| ggplotDens | 0.917 | 0.071 | 0.988 | |
| ggplotDens2 | 1.128 | 0.083 | 1.212 | |
| goodfcs | 0.039 | 0.003 | 0.042 | |
| is.DebrisFilter | 0 | 0 | 0 | |
| is.MarginEvents | 0 | 0 | 0 | |
| is.PhytopFilter | 0 | 0 | 0 | |
| is.flowFrame | 0 | 0 | 0 | |
| is.flowSet | 0.001 | 0.000 | 0.000 | |
| lnTrans | 0.170 | 0.004 | 0.174 | |
| newFlowframe | 0.174 | 0.007 | 0.181 | |
| nona | 0.102 | 0.001 | 0.103 | |
| noneg | 0.129 | 0.002 | 0.131 | |
| oneDgate | 0.172 | 0.006 | 0.177 | |
| pairsPlot | 1.548 | 0.035 | 1.583 | |
| pigmentGate | 0.229 | 0.016 | 0.245 | |
| reducedFlowframe-MarginEvents-method | 0.278 | 0.024 | 0.302 | |
| reducedFlowframe | 0.262 | 0.007 | 0.270 | |
| retain | 0.016 | 0.000 | 0.016 | |
| rowNumbers | 0.174 | 0.008 | 0.182 | |
| summaries-DebrisFilter-method | 0.239 | 0.000 | 0.239 | |
| summaries-MarginEvents-method | 0.523 | 0.046 | 0.569 | |
| summaries-PhytopFilter-method | 0.506 | 0.012 | 0.518 | |
| summaries | 0.258 | 0.006 | 0.265 | |