Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-10-09 12:03 -0400 (Thu, 09 Oct 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4854 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4642 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4587 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4584 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 494/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.17.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.17.0 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings cyanoFilter_1.17.0.tar.gz |
StartedAt: 2025-10-08 23:16:48 -0400 (Wed, 08 Oct 2025) |
EndedAt: 2025-10-08 23:20:35 -0400 (Wed, 08 Oct 2025) |
EllapsedTime: 227.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings cyanoFilter_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.5.1 Patched (2025-08-23 r88802) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.3 LTS * using session charset: UTF-8 * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 10.695 0.383 9.013 ggpairsDens 6.717 0.144 7.017 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.17.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 0.846 | 0.022 | 1.005 | |
PhytoFilter | 1.033 | 0.083 | 1.216 | |
PhytopFilter | 0.645 | 0.056 | 0.755 | |
accTest | 0.406 | 0.007 | 0.427 | |
accuracy | 0.427 | 0.035 | 0.462 | |
cellmargin | 0.327 | 0.016 | 0.350 | |
clusterExtract | 0.840 | 0.028 | 0.893 | |
clusterExtractp | 1.214 | 0.032 | 1.248 | |
debrisNc | 0.272 | 0.008 | 0.280 | |
fullFlowframe-MarginEvents-method | 0.248 | 0.004 | 0.252 | |
fullFlowframe-PhytopFilter-method | 0.616 | 0.043 | 0.716 | |
fullFlowframe | 0.317 | 0.003 | 0.396 | |
gateFunc | 10.695 | 0.383 | 9.013 | |
ggpairsDens | 6.717 | 0.144 | 7.017 | |
ggplotDens | 1.207 | 0.047 | 1.288 | |
ggplotDens2 | 1.066 | 0.051 | 1.176 | |
goodfcs | 0.049 | 0.003 | 0.088 | |
is.DebrisFilter | 0 | 0 | 0 | |
is.MarginEvents | 0 | 0 | 0 | |
is.PhytopFilter | 0.001 | 0.000 | 0.000 | |
is.flowFrame | 0 | 0 | 0 | |
is.flowSet | 0 | 0 | 0 | |
lnTrans | 0.221 | 0.008 | 0.229 | |
newFlowframe | 0.216 | 0.015 | 0.230 | |
nona | 0.100 | 0.001 | 0.149 | |
noneg | 0.175 | 0.003 | 0.234 | |
oneDgate | 0.223 | 0.004 | 0.272 | |
pairsPlot | 2.193 | 0.047 | 2.421 | |
pigmentGate | 0.396 | 0.025 | 0.425 | |
reducedFlowframe-MarginEvents-method | 0.437 | 0.007 | 0.464 | |
reducedFlowframe | 0.297 | 0.003 | 0.301 | |
retain | 0.012 | 0.001 | 0.014 | |
rowNumbers | 0.182 | 0.009 | 0.191 | |
summaries-DebrisFilter-method | 0.617 | 0.032 | 0.661 | |
summaries-MarginEvents-method | 0.312 | 0.006 | 0.317 | |
summaries-PhytopFilter-method | 0.629 | 0.006 | 0.664 | |
summaries | 0.333 | 0.005 | 0.350 | |